1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCAAAAGACAATCCTAGTCAACCATGCGGGTTGACTGCTTTTGTGGGCTACAAGGCTGGAATGACCCACATTGTTAGAGAGGTTGAGAAACCTGGATCAAgtaagtgtgacttttttttaattttaaattctgaatgtgggaagggtaatattttttattgttaaactgtagcattgtaaaaccagtatttacaaatgta...
species | Glycine max |
transcript | GLYMA09G00280.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAAGGCTGGAATGACCCACATTGTTAGAGAGGTTGAGAAACCTGGATCAA AGCTTCATAAGAAAGAGACATGTGAAGCTGTCACCATCATCGAAACTCCTCEST: gi|6747663|gb|AW318054.1|AW318054
genomic: CAAGGCTGGAATGACCCACATTGTTAGAGAGGTTGAGAAACCTGGATCAAgtaagtgtga ... gccaatgtagAGCTTCATAAGAAAGAGACATGTGAAGCTGTCACTATCATCGAAACTCCTC
EST: CAAGGCTGGAATGACCCACATTGTTAGAGAGGTTGAGAAACCTGGATCAA AGCTTCATAAGAAAGAGACATGTGAAGCTGTCACTATCATCGAAACTCCTCEST: gi|192297328|gb|FG990648.1|FG990648
genomic: CAAGGCTGGAATGACCCACATTGTTAGAGAGGTTGAGAAACCTGGATCAAgtaagtgtga ... gccaatgtagAGCTTCATAAGAAAGAGACATGTGAAGCTGTCACTATCATCGAAACTCCTC
EST: CAAGGCTGGAATGACCCACATTGTTAGAGAGGTTGAGAAACCTGGATCAA AGCTTCATAAGAAAGAGACATGTGAAGCTGTCACTATCATCGAAACTCCTCEST: gi|213590476|gb|DB972283.1|DB972283
genomic: CAAGGCTGGAATGACCCACATTGTTAGAGAGGTTGAGAAACCTGGATCAAgtaagtgtga ... gccaatgtagAGCTTCATAAGAAAGAGACATGTGAAGCTGTCACTATCATCGAAACTCCTC
EST: CAAGGCTGGAATGACCCACATTGTTAGAGAGGTTGAGAAACCTGGATCAA AGCTTCATAAGAAAGAGACATGTGAAGCTGTCACTATCATCGAAACTCCTC
genomic: CAAGGCTGGAATGACCCACATTGTTAGAGAGGTTGAGAAACCTGGATCAAgtaagtgtga ... gccaatgtagAGCTTCATAAGAAAGAGACATGTGAAGCTGTCACTATCATCGAAACTCCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAAAAGACAATCCTAGTCAACCATGCGGGTTGACTGCTTTTGTGGGCTACAAGGCTGGAATGACCCACATTGTTAGAGAGGTTGAGAAACCTGGATCAAgtaagtgtgacttttttttaattttaaattctgaatgtgggaagggtaatattttttattgttaaactgtagcattgtaaaaccagtatttacaaatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggaagg