1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaatatcttttatttattctgaaatttcttctttcaaacttaacagccagtgtggcggacagtggactacaaactatggggcgtggacacata...
species | Glycine max |
transcript | GLYMA08G47790.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATTTTTCAGAAAGCTACCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|17153408|gb|BM143341.1|BM143341
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|213587880|gb|DB959704.1|DB959704
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|26059043|gb|CA801957.1|CA801957
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|18692732|gb|BM521580.1|BM521580
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|6481766|gb|AW201037.1|AW201037
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|213591047|gb|DB973788.1|DB973788
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|254315550|gb|GR825359.1|GR825359
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|6133795|gb|AW132188.1|AW132188
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|19453272|gb|BM954682.1|BM954682
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|9439831|gb|BE440344.1|BE440344
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: AGTTGTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|254346140|gb|GR859753.1|GR859753
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|254336110|gb|GR841435.1|GR841435
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|8283342|gb|BE020903.1|BE020903
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|5126502|gb|AI748238.1|AI748238
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGNGAACTTGTEST: gi|16106060|gb|BI893800.1|BI893800
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|15813619|gb|BI785894.1|BI785894
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|9565717|gb|BE475226.1|BE475226
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|11688467|gb|BF596143.1|BF596143
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|18039782|gb|BM308076.1|BM308076
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|19936998|gb|BQ081103.1|BQ081103
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|41146374|gb|CK606585.1|CK606585
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|192309107|gb|FG999390.1|FG999390
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|16347482|gb|BI973077.1|BI973077
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|19271012|gb|BM887268.1|BM887268
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|209710574|gb|BW676526.1|BW676526
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|209718567|gb|BW662685.1|BW662685
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|308098290|gb|HO760031.1|HO760031
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: TCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|254326716|gb|GR832868.1|GR832868
genomic: TCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|16996699|gb|BM086071.1|BM086071
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|17022331|gb|BM093365.1|BM093365
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|254322565|gb|GR837979.1|GR837979
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGTEST: gi|22540587|gb|BU090430.1|BU090430
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
EST: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAG GGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
genomic: ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaa ... aatcatgcagGGAACTTGTGCAAGCAGGGAAAGACATTGAAAGTGCATATTGGGAACTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTTTCAGAAAGCTATCTCATCATCGAATGCTTACAATGATCAGTTCAGgtaccatcaatatcttttatttattctgaaatttcttctttcaaacttaacagccagtgtggcggacagtggactacaaactatggggcgtggacacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggcgt