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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGTGATCGTTAGAGCTCGGAATTTACGTGCTGCGGCGAATTTTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAGgtttgtttgataattagtgtatattcttgtttttccagaaggttttatggtttaagtgtgttgttcttgatcgggagaatattgaagtttcattatactg...

Basic information

species Glycine max
transcript GLYMA08G44410.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306569|gb|FG997239.1|FG997239
EST:     TTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAG                         GAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCA
genomic: TTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAGgtttgtttga ... tccattgaagGAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCA
EST: gi|192312658|gb|FK004346.1|FK004346
EST:     TTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAG                         GAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCA
genomic: TTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAGgtttgtttga ... tccattgaagGAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCA
EST: gi|193464599|gb|FK429699.1|FK429699
EST:     TTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAG                         GAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCA
genomic: TTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAGgtttgtttga ... tccattgaagGAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCA
EST: gi|193609755|gb|FK560755.1|FK560755
EST:     TCGCAAAATTTATTTTTGTAACGAG                         GAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCA
genomic: TCGCAAAATTTATTTTTGTAACGAGgtttgtttga ... tccattgaagGAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCA
EST: gi|193451079|gb|FK415693.1|FK415693
EST:     TCGCAAAATTTATTTTTGTAACGAG                         GAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCA
genomic: TCGCAAAATTTATTTTTGTAACGAGgtttgtttga ... tccattgaagGAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCA
EST: gi|208254200|gb|GE051670.1|GE051670
EST:     TTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAG                         GAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCA
genomic: TTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAGgtttgtttga ... tccattgaagGAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCA
EST: gi|7042339|gb|AW472233.1|AW472233
EST:     TTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAG                         GAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCA
genomic: TTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAGgtttgtttga ... tccattgaagGAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCA
EST: gi|192312657|gb|FK004345.1|FK004345
EST:     TTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAG                         GAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCA
genomic: TTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAGgtttgtttga ... tccattgaagGAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCA
EST: gi|192323021|gb|FK016752.1|FK016752
EST:     TTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAG                         GAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCA
genomic: TTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAGgtttgtttga ... tccattgaagGAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCA
EST: gi|192294522|gb|FG987451.1|FG987451
EST:     TTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAG                         GAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCA
genomic: TTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAGgtttgtttga ... tccattgaagGAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCA
EST: gi|6913352|gb|AW394882.1|AW394882
EST:     GTATTCCTTCCAAGGCTCTTCGTGCTCGCANAATGTATTTGTGTAACGAG                         GAAAATGGTCTGTTGTTTGTTCCAGAAGGCCCAGG-CCAGAATCCGCAAGC
genomic: TTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAGgtttgtttga ... tccattgaagGAAAATGGTCTGTTGTTTGTTCCAAAAGGCC-AGGGCCAGAATCCGCAAGC
EST: gi|19053064|gb|BM731731.1|BM731731
EST:     TTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAG                         GAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCA
genomic: TTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAGgtttgtttga ... tccattgaagGAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCA
EST: gi|17023264|gb|BM094298.1|BM094298
EST:     TTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAG                         GAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCA
genomic: TTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAGgtttgtttga ... tccattgaagGAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCA
EST: gi|7588400|gb|AW704196.1|AW704196
EST:     TTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAG                         GAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCACAAGCA
genomic: TTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAGgtttgtttga ... tccattgaagGAAAATGGTCTGTTGTTTGTTCCAAAAGGCCAGGGCCAGAATCCGCAAGCA
EST: gi|298181915|gb|HO026090.1|HO026090
EST:     TTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAG                         GAAAATGGTCTGTTGTTTGTTCCAAAAGG
genomic: TTATTCCTTCCAAGGCTTTTCGTGCTCGCAAAATTTATTTTTGTAACGAGgtttgtttga ... tccattgaagGAAAATGGTCTGTTGTTTGTTCCAAAAGG