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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATATATGGGTCCACCTCTAATGATCCTCCGCAGTTCAAAAGAGCTGCTGGACACAAGGATTTGTTCTACATTGATGACAAAGACGTGGATATCAAAGATgtaagatttctaggtacatcaagattgctattctattgaaaagtagttgaattgcttcttgatatggtgttctcacatttttcttgatttgtatag

Basic information

species Glycine max
transcript GLYMA08G43490.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G43490.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv19s0090g01310.t01 (Vitis vinifera), 5'ss of exon 3
AATATATGGGTCCACCTCTAATGATCCTCCGCAGTTCAAAAGAGCTGCTGGACACAAGGATTTGTTCTACATTGATGACAAAGACGTGGATATCAAAGATgtaagat-ttctaggtacatcaagattgctattctattgaaaagtagttgaattgcttcttgatatggtgttctcacatttttcttgatttgtatag
| | ||||| | |||||||   | ||||  |||||| ||||||||||||||||| || |||||||||||  |||||||||| || || ||  | ||||| ||||||   |   | |     || |||||  ||  | || |   | | ||| || |||| ||||     |||| || || ||   || |   |  ||
ACTTTATGGCTTCACCTCTGGAGGTCCTAGGCAGTTTAAAAGAGCTGCTGGACATAAAGATTTGTTCTATGTTGATGACAAGGATGTAGAATTTAAAGACgtaagaaactactgatgatgtaaaattgcc-tttaactgtat--ttgctgagttacttcctgat-----gttcccatatattggctggtgcatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192328859|gb|FK023261.1|FK023261
EST:     GACACAAGGATTTGTTCTACATTGATGACAAAGACGTGGATATCAAAGAT                         ATCATTGAAGCTCCTTTACCAAAAGCACCCCTTGATACATCAATTACTAGC
genomic: GACACAAGGATTTGTTCTACATTGATGACAAAGACGTGGATATCAAAGATgtaagatttc ... atttgtatagATCATTGAAGCTCCTTTACCAAAAGCACCCCTTGATACATCAATTACTAGC
EST: gi|10232940|gb|BE801828.1|BE801828
EST:     GACACAAGGATTTGTTCTACATTGATGACAAAGACGTGGATATCAAAGAT                         ATCATTGAAGCTCCTTTACCAAAAGCACCCCTTGATACATCAATTACTAGC
genomic: GACACAAGGATTTGTTCTACATTGATGACAAAGACGTGGATATCAAAGATgtaagatttc ... atttgtatagATCATTGAAGCTCCTTTACCAAAAGCACCCCTTGATACATCAATTACTAGC