Sequence
atgc intronic sequence ATGC exonic sequenceATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAACTGTCGCCTATCACATGgtaagatgctgagcaaattgaacaaaatttaatagaggtgaaatcacatagacctctttgtaattgactttgtcactaaaccttagtgccacttgcactt...
Basic information
species | Glycine max |
transcript | GLYMA08G43320.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G43320.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g55000.1 (Oryza sativa), 5'ss of exon 3
ATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAACTGTCGCCTATCACATGgtaagatgctgagcaaattgaacaaaatttaatagaggtgaaatcacatagacctctttgtaattgact---ttgtcactaaaccttagtgccacttgcactt-
||||||||||| ||| | || ||||||||||| |||||||||||||| ||| | || ||||||| | || | ||| || | || | | ||| | | | | | || | | | ||| | | | | || | |||
ATGTGCAAGTTTTTTCTCCAGCAACGATGTCGGTTTGGTAGTAACTGCCGCTTGTCCCATGgtatgtaaatgcttattttgcac----ccttctaaggattaaaccccttcaaaccattgatctcttgttccgttgcctttcacctgaagcaatgatgacaccac
upper sequence: GLYMA08G43320.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G017923_T01 (Zea mays), 5'ss of exon 3
ATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAACTGTCGCCTATCACATGgtaagatgctgagcaaattgaacaaaatttaatagaggtgaaatcacatagacctctttgtaat--tgactttgtcactaaaccttagtgccacttgcactt
|| ||||||||||| |||| || ||||||||||||||||||||||| ||| | || ||||||| | | | | | ||| | | | | | | || | | || | || | | || | || | | |
ATATGCAAGTTCTTCCTACAGCAGCGATGTCGATTTGGTAGTAACTGCCGCATGTCTCATGgtatgttaattggttatttggctgttggaaggtccaaggccactaaaatgtgctttgttacgctcttgttcctttgcctgtttcataaaacaataaagat--
upper sequence: GLYMA08G43320.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0008g07000.t01 (Vitis vinifera), 5'ss of exon 3
ATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAACTGTCGCCTATCACATGgtaagatgctgagcaaattgaacaaaatttaatagaggtgaaatcacatagacctctttgtaattgactttgtcactaaaccttagtgccacttgcactt-------
|| |||||||||||| |||| |||||||| |||||||| | ||||| ||| |||||||||||| | ||||| || | |||| | |||| | ||| | | | || || | | | | || || | || | |
ATATGCAAGTTCTTTCTACAGCAACGATGCCGATTTGGCACCAACTGCCGCTTATCACATGgtatgttgctgttgttttt----attatttgg-acaggt-agatc-cttgaattggttcaaaaatcccaccattttcatgtgtttttgtctattcccttgaaagtaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208215526|gb|GE009699.1|GE009699EST: GATGTCGATTTGGTAGTAACTGTCGCCTATCACATG GACTTGATGTTCAATTGTCTGCTCTTAAGAAATATGTGCCTACAATCTGGA
genomic: GATGTCGATTTGGTAGTAACTGTCGCCTATCACATGgtaagatgct ... gcgtctacagGACTTGATGTTCAATTGTCTGCTCTTAAGAAATATGTGCCTACAATCTGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAACTGTCGCCTATCACATGgtaagatgctgagcaaattgaacaaaatttaatagaggtgaaatcacatagacctctttgtaattgactttgtcactaaaccttagtgccacttgcactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaaaa