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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATAGTTTCAATATACCCTGTTCTTTCACCACCAAATCTTACTCCTGCACAATCAAATCGAGTGTGCAATGCTCTTGCTCTTCTTCAGgtcagatgactgtcctataaagttgtgttcagcattttactgaggcattcgttttatttgttagtgaataacttcattatgtgactttcatattctagat...

Basic information

species Glycine max
transcript GLYMA08G43220.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G43220.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv19s0090g00930.t01 (Vitis vinifera), 5'ss of exon 5
GAAATAGTTTCAATATACCCTGTTCTTTCACCACCAAATCTTACTCCTGCACAATCAAATCGAGTGTGCAATGCTCTTGCTCTTCTTCAGgtcagatgactgtcct-ataaagttg--tgtt-cagcattttactgaggcattcgttttatttgttagtgaataacttcattatgtgactttcatattctagat
|| ||||||||||| || |||||||| |||||||||||||| ||||| |||||||||||||| || |||||||| ||||| ||||| ||||||| ||   | | || || |||||   ||||  ||||||||  | |   |    |||   |   |  |   ||  ||     ||| | | | |  |       
GAGATAGTTTCAATTTATCCTGTTCTATCACCACCAAATCTAACTCCAGCACAATCAAATCGGGTCTGCAATGCACTTGCCCTTCTCCAGgtcaaatattttttcttattaagttccctgttatagcatttttgtcaaaaaaaaatttccatacattttatttatgttgcacttgtcattgtaaagtcag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23735027|gb|BU765776.1|BU765776
EST:     TTACTCCTGCACAATTAAATCGAGTGTGCAATGCTCTTGCTCTTCTTCAG                         TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG
genomic: TTACTCCTGCACAATCAAATCGAGTGTGCAATGCTCTTGCTCTTCTTCAGgtcagatgac ... cttttttcagTGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG
EST: gi|6134009|gb|AW132459.1|AW132459
EST:     TTACTCCTGCACAATCAAATCGAGTGTGCAATGCTCTTGCTCTTCTTCAG                         TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG
genomic: TTACTCCTGCACAATCAAATCGAGTGTGCAATGCTCTTGCTCTTCTTCAGgtcagatgac ... cttttttcagTGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG
EST: gi|6134031|gb|AW132481.1|AW132481
EST:     TTACTCCTGCACAATCAAATCGAGTGTGCAATGCTCTTGCTCTTCTTCAG                         TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG
genomic: TTACTCCTGCACAATCAAATCGAGTGTGCAATGCTCTTGCTCTTCTTCAGgtcagatgac ... cttttttcagTGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG
EST: gi|15338043|gb|BI498699.1|BI498699
EST:     TTACTCCTGCACAATCAAATCGAGTGTGCAATGCTCTTGCTCTTCTTCAG                         TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG
genomic: TTACTCCTGCACAATCAAATCGAGTGTGCAATGCTCTTGCTCTTCTTCAGgtcagatgac ... cttttttcagTGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG
EST: gi|7478472|gb|AW666279.1|AW666279
EST:     TTACTCCTGCACAATCAAATCGAGTGTGCAATGCTCTTGCTCTTCTTCAG                         TGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG
genomic: TTACTCCTGCACAATCAAATCGAGTGTGCAATGCTCTTGCTCTTCTTCAGgtcagatgac ... cttttttcagTGTGTAGCATCTCACCCTGATACAAGGATGCTATTCCTCAATG