Sequence
atgc intronic sequence ATGC exonic sequenceCTTCCTGATTATCATGATGTGATTGAGCATCCCATGGACTTTGCTACTGTGAGGAAGAAGTTGGGAAATGGATCTTATACTACCTTAGAACAATTTGAGgtatgcaaacttgatatactttcgatgcttagacttgagatctgagactcaaaatgtgggttgttagcaagagtcagccaaatgtagttagtacttagca...
Basic information
species | Glycine max |
transcript | GLYMA08G43050.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G43050.1 (Glycine max), 5'ss of exon 5
lower sequence: GRMZM2G044044_T01 (Zea mays), 5'ss of exon 5
CTTCCTGATTATCATGATGTGATTGAGCATCCCATGGACTTTGCTACTGTGAGGAAGAAGTTGGGAAATGGATCTTATACTACCTTAGAACAATTTGAGgtatgcaaacttgatatactttcgatgcttagacttgagatctgagactcaaaatgtgggttgttagcaagagtcagcca-aatgtagttagtacttagca---
|| |||||||||||||||||||||||||| || |||||||| | || || ||||||||| | | | | ||| | || || ||||||||||| || | |||||| |||| | || | | | | | | |||| | || |||| |||||| | ||
CTGCCTGATTATCATGATGTGATTGAGCACCCAATGGACTTCGGCACCGTCAGGAAGAAGCTTGCCAGGAATGCATATCGCTCGTTTGAGCAATTTGAGgt---caga-ttgataggctttggtcatatatttaggtagcgaatggataatgaaatatcatgttgtgatttgttggccatggaatagttacctttcagttcat
upper sequence: GLYMA08G43050.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G55040.2 (Arabidopsis thaliana), 5'ss of exon 5
CTTCCTGATTATCATGATGTGATTGAGCATCCCATGGACTTTGCTACTGTGAGGAAGAAGTTGGGAAATGGATCTTATACTACCTTAGAACAATTTGAGgtatgc---aaacttgatatac---tttcgatgcttagacttgagatctgagactcaaaatgtgggttgttagcaagagtcagccaaatgtagttagtacttagca
|||||||||||||||||| |||| |||||||||||||| ||| | || |||||||||||| | | |||||||| ||| |||| || ||| | | ||||| | || ||| || | ||| ||| || || | || ||| | ||| | || | || | | | | ||||| | || | |
CTTCCTGATTATCATGATATGATAGAGCATCCCATGGATTTTTCCACAGTGAGGAAGAAGCTTGCGAATGGATCATATTCTACGTTGGAAGAGCTCGAGgtgggtgataagtttgttactcaagtttacatggagagcttttacatgatgaactgattttgtagcttttcaggatatggcttct--ctgtag--aataatggg--
upper sequence: GLYMA08G43050.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv19s0090g00610.t01 (Vitis vinifera), 5'ss of exon 5
CTTCCTGATTATCATGATGTGATTGAGCATCCCATGGACTTTGCTACTGTGAGGAAGAAGTTGGGAAATGGATCTTATACTACCTTAGAACAATTTGAGgtatgca-aacttg-atatactt---tcgatgcttagacttgagatctgagactcaaaatgtgggttgttagcaagagtcagccaaatgtagttagtacttagca
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CTGCCTGATTATCATGATGTGATTGAGCATCCAATGGACTTCGCGACAGTGAGGAAGAAACTTGGGAATGGGTCATATCGTACCTTTGAGGAATTTGAGgtaactataacttgcatttgcttcatttaatgcacctgtttt-ggtctaaga---gatatgtgatttcttctttatgttggagatgagttggattgtgatgttc-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193339504|gb|FK304823.1|FK304823EST: TATACTACCTTAGAACAATTTGAG ACTGATGTCTTTTTAATTTTGCTCAAATGCAATGCAATACAATGCACCAGA
genomic: TATACTACCTTAGAACAATTTGAGgtatgcaaac ... ttaaatgcagACTGATGTCTTTTTAA-TTTGCTCAAATGCAATGCAATACAATGCACCAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTCCTGATTATCATGATGTGATTGAGCATCCCATGGACTTTGCTACTGTGAGGAAGAAGTTGGGAAATGGATCTTATACTACCTTAGAACAATTTGAGgtatgcaaacttgatatactttcgatgcttagacttgagatctgagactcaaaatgtgggttgttagcaagagtcagccaaatgtagttagtacttagca
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT