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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATGGTAACTTAGAACAATGGCTACATGGGGCTATGAGCCAACAAGGGACACTTACCTGGGAAGCCCGGATGAAAGTTATAACTGGAACAGCCAAAGCgtaagttctactagaaaaattcaaacagaggacaacatttattatttatgttgacttgtgcaaaattggtttgtttatactgtgattgtcttgaatccct...

Basic information

species Glycine max
transcript GLYMA08G42170.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G42170.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os10g35450.1 (Oryza sativa), 5'ss of exon 4
ACAATGGTAACTTAGAACAATGGCTACATGGGGCTATGAGCCAACAAGGGACACTTACCTGGGAAGCCCGGATGAAAGTTATAACTGGAACAGCCAAAGCgtaagttctactagaaaaattcaaacagag-gacaacatttattatttatgttgacttgtgcaaaattggtttgtttatactgtgatt-gtcttgaatccct--------------
| || || ||||||||||| ||||| ||||| || ||| ||||||| ||    ||||||||||||||||| ||||||||| |   |||||  || ||||||||||    |    |      |   || |  || || | || || || |  ||  ||  |  | |  |   |  ||  |    | |    | ||  ||  ||              
ATAACGGGAACTTAGAACAGTGGCTTCATGGTGCCATGCGCCAACATGGTGTTCTTACCTGGGAAGCCCGAATGAAAGTTGTTCTTGGAATTGCTAAAGCgtaagaaacaaaccatcgtccccgtcaaaaagaaaagaattgttcttcactttagctcttttatatgtatatgtttagttgcataacccattttccataactgaattggtatacag

upper sequence: GLYMA08G42170.2 (Glycine max), 5'ss of exon 3
lower sequence: AT2G42960.1 (Arabidopsis thaliana), 5'ss of exon 3
ACAATGGTAACTTAGAACAATGGCTACATGGGGCTATGAGCCAACAAGGGACACTTACCTGGGAAGCCCGGATGAAAGTTATAACTGGAACAGCCAAAGCgtaagttctactagaaaaattcaaacagaggacaacatttattatttatgttgacttgtgcaaaattggtttgtttatactgtgattgtcttgaatccct
| | ||||||||||||||||||||||||||| || ||| | ||||| || |  || || |||||||| ||||||||| | || ||||| || ||  ||||||||||  |  |  || | || |      |    | || |    |  ||| |   || |  |||   ||| ||    |  |   | | |   |       
ATAGTGGTAACTTAGAACAATGGCTACATGGAGCAATGCGGCAACATGGAAATCTCACTTGGGAAGCACGGATGAAAATCATTACTGGTACTGCACAAGCgtaagtggt-ttgaaacagtttagcttttgttggatatgt----tcaatgcttgattattaaaag--ggtctgcaatttgtacaactttacag-------

upper sequence: GLYMA08G42170.2 (Glycine max), 5'ss of exon 3
lower sequence: AT3G59110.1 (Arabidopsis thaliana), 5'ss of exon 4
ACAATGGTAACTTAGAACAATGGCTACATGGGGCTATGAGCCAACAAGGGACACTTACCTGGGAAGCCCGGATGAAAGTTATAACTGGAACAGCCAAAGCgtaagttctactagaaa-aattcaaacagaggacaacatttattattt--atgttgacttgt----gcaaaattggtttgtt-tatactgtgattgtcttgaatccct
| | ||||||||||||||||||||||||||| || ||| |  ||||| | || || || ||||| || || |||||| |  |   ||| || ||  | ||||||||| |   | |    | |      |        | ||   ||||  |     |||  |    |  | ||||   || | | ||||   ||| |   |       
ATAGTGGTAACTTAGAACAATGGCTACATGGAGCCATGGGAAAACAAAGCACTCTCACTTGGGAGGCTCGCATGAAAATCCTTGTTGGTACTGCGCAGGCgtaagttgtttaaaatgtgactgttgttggaccttttacttgaaatttcaaaaacaactctttaaggggatattgacatgctctgtactacaattttacag-------

upper sequence: GLYMA08G42170.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0028g00310.t01 (Vitis vinifera), 5'ss of exon 5
ACAATGGTAACTTAGAACAATGGCTACATGGGGCTATGAGCCAACAAGGGACACTTACCTGGGAAGCCCGGATGAAAGTTATAACTGGAACAGCCAAAGCgtaagttctactagaaaaattcaaacagaggacaacatttattatttatgttgacttgtgcaaaattggtttgttta------tactgtgattgtcttgaatccct
||||||| ||||||||||| ||||| ||||| |||||| ||||| | || |  ||||| ||||| ||||| ||||| |||||   ||| |||||||| |||||||| |  ||   ||      || | ||    |   |||  ||||  |||        | | |||  | |    |      | || |  || | |  ||||   
ACAATGGCAACTTAGAACAGTGGCTTCATGGAGCTATGCGCCAATATGGCAACCTTACTTGGGAGGCCCGCATGAAGGTTATTCTTGGTACAGCCAAGGCgtaagtccatctctcaa---ctgaaaatagtgtcatcattaagatttgcgttactagaaccgagattaatataggcaattacctcctctatttctatgaaatc---