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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGTGATATGATTGGTCGAGCTAGAACAGGAACAGGGAAAACTCTTGCTTTTGGGATACCCATCTTGGACAGTATCATTCAGTTTAATGCTAAGCATGGgtactttatatttggttacacttacatcttacttgaatctgtagccttgtttttctgcttgaagtaggattttctggtagtatatagtcttgatttgtgtctttaactaaacaaatttttgtggttgattattcag

Basic information

species Glycine max
transcript GLYMA08G41510.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G41510.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G22330.1 (Arabidopsis thaliana), 5'ss of exon 2
GACGTGATATGATTGGTCGAGCTAGAACAGGAACAGGGAAAACTCTTGCTTTTGGGATACCCATCTTGGACAGTATCATTCAGTTTAATGCTAAGCATGGgtactttatatttggtta--cacttacatcttacttgaatctgtagccttgtttttctgcttgaagtaggattttctggtagtatatagtcttgatttgtgtctttaactaaacaaatttttgtggttgattattcag
| || |||||||||||||| ||||| || ||||| || || || |||||||||||||| || ||| | ||||  |||||  | |  || ||||| |||||||   || | |||  | |  || ||     | |    | | |||   || |||  | | ||     | ||  |||   || || | |  | | |||                                          
GTCGAGATATGATTGGTCGTGCTAGGACTGGAACGGGAAAGACACTTGCTTTTGGGATTCCTATCATTGACAAAATCATCAAATACAACGCTAAACATGGgt---ttgtgtttactgagtcatttgaggttcagagaattatgttttctggttggtttactgatttttggggttttatgtggtttttgatgt-gatag----------------------------------------

upper sequence: GLYMA08G41510.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv12s0142g00670.t01 (Vitis vinifera), 5'ss of exon 2
GACGTGATATGATTGGTCGAGCTAGAACAGGAACAGGGAAAACTCTTGCTTTTGGGATACCCATCTTGGACAGTATCATTCAGTTTAATGCTAAGCATGGgtac-tttatat---ttggttacacttacatc-ttacttgaatctgtagccttgtttttct--gcttgaagtaggattttctggtagtata-----------tagtcttgatttgtgtcttta--actaaacaaatttttgtggttgattattcag----
| ||||| ||||| ||||| ||||||||||| || |||||||| |||||||||||||| |||||| |||| |   | ||||| |  ||||||||||||||||   ||| | |      || ||||||    | ||  || ||| | || | ||  ||||    | ||||    |  || | |  ||  ||             | |     |||  |||||||  | |     ||| ||| |  |   || | ||     
GGCGTGACATGATCGGTCGTGCTAGAACAGGGACTGGGAAAACCCTTGCTTTTGGGATTCCCATCATGGATAAAGTTATTCAATACAATGCTAAGCATGGgtttgtttgtttactccagtaacacttgatccattggttcaatttttaccttttctttttgaagattgattatgtgttctgttataaaatggaacaggacatcaatgcaatttttggtctttattattggcataatattttttatgttttgtacaaacag