Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCAGATACTTCACACACTATAAAGGCAATTTGCATTGTTCACAATGAGACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagtatgtcatcccatgattgatagcctttactcattcagcctacacatttataccctttattctccataaactgccagagccacaaaatctatt...

Basic information

species Glycine max
transcript GLYMA08G41460.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G41460.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0009g03740.t01 (Vitis vinifera), 5'ss of exon 2
GCTTCAGATACTTCACACACTATAAAGGCAATTTGCATTGTTCACAATGAGACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagtatgtcatcccatgattgatagcctttact-cattcagcctacacatttataccct-ttattctccataaactg--ccagagccacaaaatctatt------------------
||  |||| |   |||||||||| |||||  |||| ||||||||||||||||| || ||||| || |||||  | |||||   ||| ||   ||| |||||| || |     ||||    |     | | | |   || ||   |  || ||||||   |  || | ||| ||||  |   |   |  |     ||  |   ||                  
GCAGCAGACAGAGCACACACTATTAAGGCTGTTTGTATTGTTCACAATGAGACCGCTACTGGAGTTACCAACAATTTGGCTGCAGTAAGGAGAATCCTTGgtaagaat----tcattttctaggccacatcttcatctgcaaggaaacttcacattaggattctgtcattttccactattgggttctcatttttaacgttcttttttgtattgaaatatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12691062|gb|BG157398.1|BG157398
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTTCTACCAGCATCCAGCCCTTCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|15200028|gb|BI424133.1|BI424133
EST:     GACTGCAACTGNGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGC
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGC
EST: gi|8669771|gb|BE190878.1|BE190878
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTTCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|120532515|gb|EH260648.1|EH260648
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|208184636|gb|GD982466.1|GD982466
EST:     ACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: ACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|120533410|gb|EH261543.1|EH261543
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|20812567|gb|BQ297045.1|BQ297045
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|6134453|gb|AW132846.1|AW132846
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|213587992|gb|DB957451.1|DB957451
EST:     GACTGCNACTGGGGTCACCAATGACTTGGGCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCC
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCC
EST: gi|6134670|gb|AW133063.1|AW133063
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|120532280|gb|EH260413.1|EH260413
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|120529049|gb|EH257183.1|EH257183
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|27426173|gb|CA937693.1|CA937693
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|120533237|gb|EH261370.1|EH261370
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|9258033|gb|BE346180.1|BE346180
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACATATTCTCG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATAT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|8669802|gb|BE190909.1|BE190909
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|20497989|gb|BQ272919.1|BQ272919
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|11687898|gb|BF595574.1|BF595574
EST:     GACTGCAACTGGG-TCACCAATGACTTGGCCCAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCCTATTGTTGGTGGA
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGA
EST: gi|17519598|gb|BM188640.1|BM188640
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|151400838|gb|EV270652.1|EV270652
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|120533611|gb|EH261744.1|EH261744
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|192296902|gb|FG991928.1|FG991928
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|23064111|gb|BU578884.1|BU578884
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|120532807|gb|EH260940.1|EH260940
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|10844488|gb|BF067747.1|BF067747
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|120532767|gb|EH260900.1|EH260900
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|7283838|gb|AW596440.1|AW596440
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|10232118|gb|BE801006.1|BE801006
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|17519105|gb|BM188147.1|BM188147
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|23052988|gb|BU577479.1|BU577479
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|17519658|gb|BM188700.1|BM188700
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|18732750|gb|BM527226.1|BM527226
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCCAGCCCTCCTTATTGTTGATGGAGTGTCTTCCATTT
EST: gi|8669722|gb|BE190829.1|BE190829
EST:     GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTG                         ATTTCTACCAGCATCCCA-CCCTCCTTATTGTTGATGGAGTGTCTTTCATT
genomic: GACTGCAACTGGGGTCACCAATGACTTGGCCAAAGTGAGACAAATTCTTGgtgagtagta ... ggacactcagATTCCTACCAGCATCC-AGCCCTCCTTATTGTTGATGGAGTGTCTTCCATT