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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAACCGAAGGACTGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgtttttctcaatcttcttaatctacagtatgtttaattttctttgtgcaaattgatggagtaccttgcttacttttgtctctggttctgtag

Basic information

species Glycine max
transcript GLYMA08G41280.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G41280.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G152573_T04 (Zea mays), 5'ss of exon 3
TAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAACCGAAGGACTGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgtttttctcaatcttcttaatctacagtatgtttaattttctttgtgcaaattgatggagtaccttgcttacttttgtctctggttctgtag
| || ||  | || || ||||| || |||||  | |  |||| |||||||||||| ||| |||||||||||||  ||||||| | ||| ||||| |||||||   |  ||||    | ||  |  ||   |  ||||||| |   | | ||  ||   |   |    |  ||   | |  |               
TGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCAAAGGACTGTGAATCGTCCATATGGTGGTGTTCTGTCTGGTACTGCAGTTAGGGAGAGgtg-atcattctttcgcatcccatgctt--gcctgtttaaatgattgtttgagaa---actaatctgcccgcacgcctcag---------------

upper sequence: GLYMA08G41280.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G032564_T01 (Zea mays), 5'ss of exon 3
TAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAACCGAAGGACTGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgtttttctcaatcttcttaatctacagtatgtttaattttctttgtgcaaattgatggagtaccttgcttacttttgtctctggttctgtag
| || ||  | || || ||||| || |||||  | |  ||||| ||||||||||||||| |||||||||||||  ||||||| |  || || ||||||||||          || ||||    | ||     |||       | | |||     ||| |||| |   ||   | || |   | |||          
TGAGACCTGCTGAGTACAAGAGGTCCAGGTTGGCAAGGAACCGCAGGACTGTGAACCGTCCATATGGTGGTGTTCTGTCTGGTACCGCAGTGAGAGAGAGgtga-------ccattctttcgcaact----catgcccg---tccattgaaatgattaatggtgatactaagtcacctgcatgtctcag-------

upper sequence: GLYMA08G41280.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0026g02410.t01 (Vitis vinifera), 5'ss of exon 3
TAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAACCGAAGGACTGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgtt-------tttct---caatcttc--ttaatctacagtatgtttaattttctttgtgcaaattgatggagtaccttgcttacttttgtctctggttctgtag
|||| ||  ||||||| ||||| || || ||||| |  ||||| ||||||||||||||||| ||||| ||||||||||||||  ||||||| || || |||| ||||       |||||   || |  ||  | |    |    || |  ||  || |  |  ||| ||    |   |  |   ||| ||||     ||||| |||||
TAAGACCTGCAGAATACAAGAGGTCTAGATTACCTAGGAACCGTAGGACTGTGAACCGTGCTTATGGGGGTGTGTTGTCTGGAGGTGCTGTGAGGGAAAGgtatgttagcaaagtttctgttcagtgctcattcatatcatttcatatggaaagttttaagatcaactttgctggacatgtc-tttattttttcaattggttttgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213602908|gb|DB972482.1|DB972482
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|254342822|gb|GR858984.1|GR858984
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|7234506|gb|AW569843.1|AW569843
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|209697145|gb|BW680555.1|BW680555
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|4313827|gb|AI460946.1|AI460946
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTNTCTTGGTTGCAGAGCANATGATTGTGA
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGA
EST: gi|15813095|gb|BI785370.1|BI785370
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|193571086|gb|FK528103.1|FK528103
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGNTTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|298170008|gb|HO018632.1|HO018632
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|19346995|gb|BM891875.1|BM891875
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAAGAGCAAA-GATTTGTGAANA-GGTA
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAA-GAGCAAAAGATT-GTGAAAAAGGTA
EST: gi|6913421|gb|AW394960.1|AW394960
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCANAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|193466687|gb|FK433438.1|FK433438
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|18734940|gb|BM528473.1|BM528473
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|23730887|gb|BU763550.1|BU763550
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTTTAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|254329350|gb|GR833722.1|GR833722
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|208087970|gb|GD891098.1|GD891098
EST:     ACCGTGCATATTGGTTGGTTGTTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: ACCGTGCATA-TGG-TGG-TG-TGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|4292763|gb|AI441951.1|AI441951
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTCTCTTGGTTGAAGAGCAAAAGATTGTGAAACAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|151407425|gb|EV277240.1|EV277240
EST:     GTGAACCGTGCATATGGTGGCGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|298177113|gb|HO027008.1|HO027008
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|192324116|gb|FK017847.1|FK017847
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|31306551|gb|CD391754.1|CD391754
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|6071303|gb|AW100690.1|AW100690
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|193341065|gb|FK307929.1|FK307929
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGTCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTAT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAG-CTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTAT
EST: gi|192329054|gb|FK021099.1|FK021099
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|208252885|gb|GE053463.1|GE053463
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGC
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGC
EST: gi|31460108|gb|CD402136.1|CD402136
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|14516244|gb|BI094916.1|BI094916
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|4295149|gb|AI442292.1|AI442292
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGANAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|23726448|gb|BU761217.1|BU761217
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|15203058|gb|BI425826.1|BI425826
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|254323978|gb|GR836210.1|GR836210
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|298163680|gb|HO012413.1|HO012413
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|151396864|gb|EV266737.1|EV266737
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|151410951|gb|EV280766.1|EV280766
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|10844777|gb|BF067979.1|BF067979
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAACATTGTGAAAAAGGGATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|31460300|gb|CD402268.1|CD402268
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|7639430|gb|AW733753.1|AW733753
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|6913607|gb|AW395137.1|AW395137
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
EST: gi|17963154|gb|BM269906.1|BM269906
EST:     GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAG                         AATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT
genomic: GTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgttttt ... ggttctgtagAATCATTCGAGCTTTCTTGGTTGAAGAGCAAAAGATTGTGAAAAAGGTATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAAGGCCAACAGAATATAAGAGATCAAGGTTACCCAAAAACCGAAGGACTGTGAACCGTGCATATGGTGGTGTGTTGTCTGGCAGTGCTGTTAGAGAGAGgtttgtttttctcaatcttcttaatctacagtatgtttaattttctttgtgcaaattgatggagtaccttgcttacttttgtctctggttctgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT