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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAACCATGCGTTGGTATTTGGAGTGATAAATGTACTTCAAGGTTTGGCAGAAGACGGCCGTTCATTCTGGCAGGATCTCTTATGATATGTCTGGCTgtaagtatctgtgacattgattgtttactttgattttgtttttttatgctacattacatatgtgctaagtcaagtcttgtaatttag

Basic information

species Glycine max
transcript GLYMA08G40980.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G40980.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G02860.2 (Arabidopsis thaliana), 5'ss of exon 3
GTTCAACCATGCGTTGGTATTTGGAGTGATAAATGTACTTCAAGGTTTGGCAGAAGACGGCCGTTCATTCTGGCAGGATCTCTTATGATATGTCTGGCTgtaagtatctgtgacattgattgttt--actttgattttgttttt------------ttatgctacattacatatgtgctaagtcaagtcttgtaatttag-------------------------
|| || || |  ||||| ||||||||||||||||||||||||| || ||| |||||||| || || ||||| |  |||||  | ||||| |   | || ||||||  |  |   |   ||  |||    ||||||||| ||||              ||   |   ||  ||||  |||||   ||  |||| |||||||                         
GTCCAGCCTTTTGTTGGCATTTGGAGTGATAAATGTACTTCAAAGTATGGAAGAAGACGACCATTTATTCTAGTTGGATCATTCATGATCTCAATAGCAgtaagtgccaatagaagatatgatttctgttttgattttcttttaggagatagctggctacattgtgttttatataagctaaacaaaagcttgcaatttaggtgataataatcggattttctgcag

upper sequence: GLYMA08G40980.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G02860.1 (Arabidopsis thaliana), 5'ss of exon 3
GTTCAACCATGCGTTGGTATTTGGAGTGATAAATGTACTTCAAGGTTTGGCAGAAGACGGCCGTTCATTCTGGCAGGATCTCTTATGATATGTCTGGCTgtaagtatctgtgacattgattgttt--actttgattttgttttt------------ttatgctacattacatatgtgctaagtcaagtcttgtaatttag
|| || || |  ||||| ||||||||||||||||||||||||| || ||| |||||||| || || ||||| |  |||||  | ||||| |   | || ||||||  |  |   |   ||  |||    ||||||||| ||||              ||   |   ||  ||||  |||||   ||  |||| |||||||
GTCCAGCCTTTTGTTGGCATTTGGAGTGATAAATGTACTTCAAAGTATGGAAGAAGACGACCATTTATTCTAGTTGGATCATTCATGATCTCAATAGCAgtaagtgccaatagaagatatgatttctgttttgattttcttttaggagatagctggctacattgtgttttatataagctaaacaaaagcttgcaatttag