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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATGATGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAATACTTTACAGACTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGgtttgagttaaatatgttgcagaatgttcatctgactaattttatgccagcatttaacttctgtgtatacag

Basic information

species Glycine max
transcript GLYMA08G40490.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G40490.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g12580.1 (Oryza sativa), 5'ss of exon 3
CTATGATGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAATACTTTACAGACTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGgtttg--agttaaatatgttgcagaatgttcatctgac-taattttatgccagcatttaacttctgtgtatacag------------
||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||| || || || || || |  ||||||||  | || | ||  |||| |    || | ||||  ||   |||| |||  || |  ||    |||  |               
CTACGATGAATGCTTGAGAAAGTATGGAAATGCAAATGTATGGAAATACTTTACAGACTTGTTTGATTATTTGCCTCTCACAGCTCTTATAGAAAACCAGgtttgttacttgacta-attgcgg----tttaactgatataggcttat-ccaatatatgcctgacatgtgaatcacccattttatag

upper sequence: GLYMA08G40490.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os06g37660.1 (Oryza sativa), 5'ss of exon 3
CTATGATGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAATACTTTACAGACTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGgtttgagttaaatatgttgcagaatgttcatctgactaattttatgccagcatttaactt--ctgtgtatacag----------------------------------
|||||| ||||||||  | || ||||||||||| ||||| ||||| ||||| || ||||||||||||||||| ||||| || || ||  | || |  |||||| |   |     | ||||  ||||||  |   | |||| |       | | | | |||  |  ||||||  |                                  
CTATGACGAATGCTTACGGAAGTATGGAAATGCAAATGTTTGGAAGTACTTCACGGACTTGTTTGATTATTTGCCTCTCACAGCTCTTGTAGAAAACCAGgttagctct-----ttttgccaaatgtttgttctattaatatggacattgaactcagcttgtccatgtatatggcatacctgacaagaggaaaaatttcattttgtag

upper sequence: GLYMA08G40490.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G038195_T01 (Zea mays), 5'ss of exon 3
CTATGATGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAATACTTTACAGACTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGgtttg-agttaaatatgttgcag--aatgttcatct-gactaattt--tatgccagcatttaacttctgtgtatacag---------
||||||||||||||| ||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||| ||||| || || || || || | |||||| || |  | ||| ||||   |   ||| |  | | | ||  ||   |||    || ||||  ||      | |            
CTATGATGAATGCTTAAGAAAATATGGAAATGCAAATGTATGGAAGTATTTTACAGACTTGTTTGATTATTTGCCTCTCACAGCTCTTATAGAAAATCAGgtatgcatcttaatttgttatggttgatgctattataggcttgttgaatatatatgcctttacatttgagaaacatccatttcacag

upper sequence: GLYMA08G40490.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G119546_T01 (Zea mays), 5'ss of exon 3
CTATGATGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAATACTTTACAGACTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGgtttgagtt--aaatatgttgcagaatgttcat-ctgactaattttatgccagcatttaacttctgtgtatacag------------------
|||||||||||||||| | |||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||| || || || || || | |||||||||   |     ||||| | ||    || ||  | |||  |  |         | ||      |   |  | |                  
CTATGATGAATGCTTGCGGAAATATGGAAATGCAAATGTGTGGAAGTACTTTACAGACTTGTTTGATTATTTGCCTCTCACAGCTCTTATAGAAAATCAGgtttgttctctggttatgtcgtagcgcattgatattaacttgtgattctgttctgtctatacctggcaaaagctgaaaaattccattttgcag

upper sequence: GLYMA08G40490.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G133464_T01 (Zea mays), 5'ss of exon 3
CTATGATGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAATACTTTACAGACTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGgtttgag--ttaaatatgttgcag--aatgttcatct-gactaattttatgccagcatttaacttctgtgtatacag-----------
||||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||||| ||| ||||| || || || || || | |||||| ||    | || | ||||   |   ||  |  | | | ||   |  ||     | ||| || | || | | |||            
CTATGATGAATGCTTAAGAAAATATGGAAATGCAAATGTCTGGAAGTATTTTACAGACTTGTTTGATTTTTTGCCTCTCACAGCTCTTATAGAAAATCAGgtatgcagctcaattttgttatggttgatactgttataggcttgctgaatatatccctttgacatttgagaa-acatccattttgcag

upper sequence: GLYMA08G40490.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G59830.2 (Arabidopsis thaliana), 5'ss of exon 3
CTATGATGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAATACTTTACAGACTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGgtttgagttaaatatgtt-gcag--aatgt-tcatctg-actaattttatgccagcatttaacttctg----tgtatacag------
 ||||| ||||||||||| ||||| |||||||| ||||| ||||| || ||||| ||| | || |||||| | ||||| || || ||||| |||||||||||| ||| |     ||   |  |  | ||| ||||| | | |  ||| |   | ||| ||  ||||      ||||| | |      
TTATGACGAATGCTTGAGGAAATACGGAAATGCAAATGTGTGGAAGTATTTTACGGACCTTTTCGATTATCTCCCTCTTACAGCACTCATAGAGAGTCAGgttcgagctgttcttgccagtcgtcattgtatcatccgtagttgtttcacttccgcacttttcttcatcaactgtattccgtgacag

upper sequence: GLYMA08G40490.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G69960.1 (Arabidopsis thaliana), 5'ss of exon 3
CTATGATGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAATACTTTACAGACTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGgt-ttgagttaaatatgttgcagaatgttcatctgac-taattttatgccagcatttaac-ttctg----tgtatacag------------------
 ||||||||||| ||||| |||||||||||||| ||||| |||||  |||| || ||  | ||||||||| | || || || || || |||||||||||||| || |   || ||    ||    |    | || |   ||| |  |  | |  | |    || ||    ||  |||||                  
TTATGATGAATGTTTGAGGAAATATGGAAATGCTAATGTATGGAAGCACTTCACTGATCTTTTTGATTATCTTCCACTTACAGCTCTTATTGAGAGTCAGgtatttaaaaaactaatgagcgttttcactaccttagacaatctcttctctgtttctgctgttttggacttgactacagaactctttttttctgtag

upper sequence: GLYMA08G40490.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G10430.1 (Arabidopsis thaliana), 5'ss of exon 3
CTATGATGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAATACTTTACAGACTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGgtttgagttaaatatgttgcag--aatgttc-atctgactaattttatgc-cagcattt-aacttctgtgtatacag---
 ||||| ||||||||||| || || |||||||| || |||||||| || ||||||||| | || |||||| | ||||| || |||||||| |||||||||||| ||| |   | | |  |||    ||||  ||    ||  || || |  |||| |||  |||||     ||   |   
TTATGACGAATGCTTGAGGAAGTACGGAAATGCTAACGTCTGGAAGTATTTTACAGACCTTTTCGATTATCTTCCTCTTACCGCCCTCATAGAGAGTCAGgttagagctgt-tctttctcagttggtgtttgatacatctttttctaagtacagctttttgacttcatcaaattttgtag

upper sequence: GLYMA08G40490.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0026g01080.t01 (Vitis vinifera), 5'ss of exon 3
CTATGATGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAATACTTTACAGACTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGgtttgagttaaatatgttgcagaatgttca-tctgactaatttt-------atgccagcatttaacttctgtgtatacag---
 ||||| |||||||||||||||||||||||||||||||||||||| || ||||| ||| | ||||||||| |||| || || |||||||||||||||||||||||||||    ||||| |  |   || | | |||  |||||        || |   ||   |  |  ||| |||||     
TTATGACGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAGTATTTTACCGACCTTTTTGATTATCTACCCCTTACAGCCCTCATTGAGAGTCAGgtttgagttgtccatgtttcttatgttttactttgataaatttcctgactgatactgacagccatatattgtttataccatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19271154|gb|BM887410.1|BM887410
EST:     TTACAGACTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAG                         ATTTTCTGCTTGCATGGAGGTCTCTCACCTTCTTTGGATACACTGGATAAC
genomic: TTACAGACTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGgtttgagtta ... gtgtatacagATTTTCTGCTTGCATGGAGGTCTCTCACCTTCTTTGGATACACTGGATAAC
EST: gi|298180664|gb|HO022103.1|HO022103
EST:     TTACAGACTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAG                         ATTTTCTGCTTGCATGGAGGTCTCTCACCTTCTTTGGATACACTGGATAAC
genomic: TTACAGACTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGgtttgagtta ... gtgtatacagATTTTCTGCTTGCATGGAGGTCTCTCACCTTCTTTGGATACACTGGATAAC
EST: gi|13125537|gb|BG316107.1|BG316107
EST:     TTACAGACTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAG                         ATTTTCTGCTTGCATGGAGGTCTCTCACCTAT-TTTGGATACACTGGATAA
genomic: TTACAGACTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGgtttgagtta ... gtgtatacagATTTTCTGCTTGCATGGAGGTCTCTCACCT-TCTTTGGATACACTGGATAA
EST: gi|193477275|gb|FK443160.1|FK443160
EST:     CCCTCATTGAGAGTCAG                         ATTTTCTGCTTGCATGGAGGTCTCTCACCTTCTTTGGATACACTGGATAAC
genomic: CCCTCATTGAGAGTCAGgtttgagtta ... gtgtatacagATTTTCTGCTTGCATGGAGGTCTCTCACCTTCTTTGGATACACTGGATAAC
EST: gi|6502406|gb|AW203779.1|AW203779
EST:     TTACAGACTTGTTTGATTATTTGCCTCTGACTGCCCTCATTGAGAGTCAG                         ATTTTCTGCTTGCATGGAGGTCTCTCACCTTCTTTGGATACACTGGATAAC
genomic: TTACAGACTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGgtttgagtta ... gtgtatacagATTTTCTGCTTGCATGGAGGTCTCTCACCTTCTTTGGATACACTGGATAAC
EST: gi|208162256|gb|GD961811.1|GD961811
EST:     TTACAGACTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAG                         ATTTTCTGCTTGCATGGAGGTCTCTCA
genomic: TTACAGACTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGgtttgagtta ... gtgtatacagATTTTCTGCTTGCATGGAGGTCTCTCA