1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTAGATGGCATGGATGCTCTTGCTGTGAAACAAGCTTGTAAATTTGCAAAGGAGTTTGCTTTGAAGAATGGTCCCATTgtaagtaaattaacctctcatttgtacttatattttttaagaatttttttagcttttaggaatgattcttttattctctgttatattataattgatttctctatcttaattattttgtccag
species | Glycine max |
transcript | GLYMA08G40380.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AACAAGCTTGTAAATTTGCAAAGGAGTTTGCTTTGAAGAATGGTCCCATT ATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCTEST: gi|6725662|gb|AW310061.1|AW310061
genomic: AACAAGCTTGTAAATTTGCAAAGGAGTTTGCTTTGAAGAATGGTCCCATTgtaagtaaat ... ttttgtccagATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCT
EST: AACAAGCTTGTAAATTTGCAAAGGAGTTTGCTTTGAAGAATGGTCCCATT ATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCTEST: gi|10848193|gb|BF070736.1|BF070736
genomic: AACAAGCTTGTAAATTTGCAAAGGAGTTTGCTTTGAAGAATGGTCCCATTgtaagtaaat ... ttttgtccagATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCT
EST: AACAAGCTTGTAAATTTGCAAAGGAGTTTGCTTTGAAGAATGGTCCCATT ATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCTEST: gi|7591537|gb|AW707268.1|AW707268
genomic: AACAAGCTTGTAAATTTGCAAAGGAGTTTGCTTTGAAGAATGGTCCCATTgtaagtaaat ... ttttgtccagATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCT
EST: AACAAGCTTGTAAATTTGCAAAGGAGTTTGCTTTGAAGAATGGTCCCATT ATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCTEST: gi|7692225|gb|AW760338.1|AW760338
genomic: AACAAGCTTGTAAATTTGCAAAGGAGTTTGCTTTGAAGAATGGTCCCATTgtaagtaaat ... ttttgtccagATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCT
EST: AACAAGCTTGTAAATTTGCAAAGGAGTTTGCTTTGAAGAATGGTCCCATT ATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCTEST: gi|5607004|gb|AI901102.1|AI901102
genomic: AACAAGCTTGTAAATTTGCAAAGGAGTTTGCTTTGAAGAATGGTCCCATTgtaagtaaat ... ttttgtccagATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCT
EST: AAGGAGTTTGCTCTGAAGAATGGTCCCATT ATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCT
genomic: AAGGAGTTTGCTTTGAAGAATGGTCCCATTgtaagtaaat ... ttttgtccagATTCTTGAAATGGACACATACAGATACCATGGCCACTCCATGTCTGATCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAGATGGCATGGATGCTCTTGCTGTGAAACAAGCTTGTAAATTTGCAAAGGAGTTTGCTTTGAAGAATGGTCCCATTgtaagtaaattaacctctcatttgtacttatattttttaagaatttttttagcttttaggaatgattcttttattctctgttatattataattgatttctctatcttaattattttgtccag
- - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA