1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGCTCAAGTTTGTATGAACACTGTGTTGCTGCACGGCGATCGATACATGTTGTGAATCTTGACCCTGCTGCTGAAAATTTTGACTATCCTGTTGCGATGGgtaagtagaatttgttattatgttgttatttctttcacgggtttggagttttgtgatttgcggagcttgacttgactttcttgggttgacatgcttgcag
species | Glycine max |
transcript | GLYMA08G39880.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTGAATCTTGACCCTGCTGCTGAAAATTTTGACTATCCTGTTGCGATGG ATATAAGGGAACTCATTTCCCTAGATGATGTTATGGAGGAACTTGGATTGGEST: gi|192299207|gb|FG988665.1|FG988665
genomic: TGTGAATCTTGACCCTGCTGCTGAAAATTTTGACTATCCTGTTGCGATGGgtaagtagaa ... atgcttgcagATATAAGGGAACTCATTTCCCTAGATGATGTTATGGAGGAACTTGGATTGG
EST: TGTGAATCTTGACCCTGCTGCTGAAAATTTTGACTATCCTGTTGCGATGG ATATAAGGGAACTCATTTCCCTAGATGATGTTATGGAGGAACTTGGATTGGEST: gi|209724731|gb|BW651474.1|BW651474
genomic: TGTGAATCTTGACCCTGCTGCTGAAAATTTTGACTATCCTGTTGCGATGGgtaagtagaa ... atgcttgcagATATAAGGGAACTCATTTCCCTAGATGATGTTATGGAGGAACTTGGATTGG
EST: TGTGAATCTTGACCCTGCTGCTGAAAATTTTGACTATCCTGTTGCGATGG ATATAAGGGAACTCATTTCCCTAGATGATGTTATGGAGGAACTTGGATTGGEST: gi|209716787|gb|BW665465.1|BW665465
genomic: TGTGAATCTTGACCCTGCTGCTGAAAATTTTGACTATCCTGTTGCGATGGgtaagtagaa ... atgcttgcagATATAAGGGAACTCATTTCCCTAGATGATGTTATGGAGGAACTTGGATTGG
EST: TGTGAATCTTGACCCTGCTGCTGAAAATTTTGACTATCCTGTTGCGATGG ATATAAGGGAACTCATTTCCCTAGATGATGTTATGGAGGAACTTGGATTGGEST: gi|298191853|gb|HO035935.1|HO035935
genomic: TGTGAATCTTGACCCTGCTGCTGAAAATTTTGACTATCCTGTTGCGATGGgtaagtagaa ... atgcttgcagATATAAGGGAACTCATTTCCCTAGATGATGTTATGGAGGAACTTGGATTGG
EST: TGTGAATCTTGACCCTGCTGCTGAAAATTTTGACTATCCTGTTGCGATGG ATATAAGGGAACTCATTTCCCTAGATGATGTTATGGAGGAACTTGGATTGGEST: gi|192306145|gb|FG996577.1|FG996577
genomic: TGTGAATCTTGACCCTGCTGCTGAAAATTTTGACTATCCTGTTGCGATGGgtaagtagaa ... atgcttgcagATATAAGGGAACTCATTTCCCTAGATGATGTTATGGAGGAACTTGGATTGG
EST: TGTGAATCTTGACCCTGCTGCTGAAAATTTTGACTATCCTGTTGCGATGG ATATAAGGGAACTCATTTCCCTAGATGATGTTATGGAGGAACTTGGATTGGEST: gi|192297923|gb|FG993202.1|FG993202
genomic: TGTGAATCTTGACCCTGCTGCTGAAAATTTTGACTATCCTGTTGCGATGGgtaagtagaa ... atgcttgcagATATAAGGGAACTCATTTCCCTAGATGATGTTATGGAGGAACTTGGATTGG
EST: TGTGAATCTTGACCCTGCTGCTGAAAATTTTGACTATCCTGTTGCGATGG ATATAAGGGAACTCATTTCCCTAGATGATGTTATGGAGGAACTTGGATTGGEST: gi|298190764|gb|HO032885.1|HO032885
genomic: TGTGAATCTTGACCCTGCTGCTGAAAATTTTGACTATCCTGTTGCGATGGgtaagtagaa ... atgcttgcagATATAAGGGAACTCATTTCCCTAGATGATGTTATGGAGGAACTTGGATTGG
EST: TGTGAATCTTGACCCTGCTGCTGAAAATTTTGACTATCCTGCTGCGATGG ATATAAGGGAACTCATTTCCCTAGATGATGTTATGGAGGAACTTGGA
genomic: TGTGAATCTTGACCCTGCTGCTGAAAATTTTGACTATCCTGTTGCGATGGgtaagtagaa ... atgcttgcagATATAAGGGAACTCATTTCCCTAGATGATGTTATGGAGGAACTTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTCAAGTTTGTATGAACACTGTGTTGCTGCACGGCGATCGATACATGTTGTGAATCTTGACCCTGCTGCTGAAAATTTTGACTATCCTGTTGCGATGGgtaagtagaatttgttattatgttgttatttctttcacgggtttggagttttgtgatttgcggagcttgacttgactttcttgggttgacatgcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT