1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGGCGGAGCTGGATACCGCCACCGCAAACGGGTCGACGCCGTTTAACCCGGACGAGAGGATCCGAACCGGGTTCGCCCACTTCAAGAACGAGAAATACCAgtgagtaatatggtcttctattattatttcgttttgaaattccgaatttccaatttgcgtgcgtagaatatgcgggtcttttttcactgttctagttagg...
species | Glycine max |
transcript | GLYMA08G39510.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GACGAGAGGATCCGAACCGGGTTCGCCCACTTCAAGAACGAGAAATACCA GAAGAACCCGGAATTATATGGCGAACTTGCCAAAGGCCAGAGTCCAAAGEST: gi|19271202|gb|BM887458.1|BM887458
genomic: GACGAGAGGATCCGAACCGGGTTCGCCCACTTCAAGAACGAGAAATACCAgtgagtaata ... atcattgcagGAAGAACCCGGAATTATATGGCGAACTTGCCAAAGGCCAGAGTCCAAAG
EST: GACGAGAGGATCCGAACCGGGTTCGCCCACTTCAAGAACGAGAAATACCA GAAGAACCCGGAATTATATGGCGAACTTGCCAAAGGCCAGAGTCCAAAGEST: gi|192305002|gb|FG997128.1|FG997128
genomic: GACGAGAGGATCCGAACCGGGTTCGCCCACTTCAAGAACGAGAAATACCAgtgagtaata ... atcattgcagGAAGAACCCGGAATTATATGGCGAACTTGCCAAAGGCCAGAGTCCAAAG
EST: GACGAGAGGATCCGAACCGGGTTCGCCCACTTCAAGAACGAGAAATACCA GAAGAACCCGGAATTATATGGCGAACTTGCCAAAGGCCAGAGTCCAAAGEST: gi|192297727|gb|FG989962.1|FG989962
genomic: GACGAGAGGATCCGAACCGGGTTCGCCCACTTCAAGAACGAGAAATACCAgtgagtaata ... atcattgcagGAAGAACCCGGAATTATATGGCGAACTTGCCAAAGGCCAGAGTCCAAAG
EST: GACGAGAGGATCCGAACCGGGTTCGCCCACTTCAAGAACGAGAAATACCA GAAGAACCCGGAATTATATGGCGAACTTGCCAAAGGCCAGAGTCCAAAG
genomic: GACGAGAGGATCCGAACCGGGTTCGCCCACTTCAAGAACGAGAAATACCAgtgagtaata ... atcattgcagGAAGAACCCGGAATTATATGGCGAACTTGCCAAAGGCCAGAGTCCAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCGGAGCTGGATACCGCCACCGCAAACGGGTCGACGCCGTTTAACCCGGACGAGAGGATCCGAACCGGGTTCGCCCACTTCAAGAACGAGAAATACCAgtgagtaatatggtcttctattattatttcgttttgaaattccgaatttccaatttgcgtgcgtagaatatgcgggtcttttttcactgttctagttagg
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC