1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAGGGTTGGATATAGCTCTCAGGGTTCTGGATCCACACTTATTATGCCATTTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAGgtgaggttctgaaattggcgcttttcttgaaatatttgattcttcaactttattgactgacatgcctacattaaaaaatatgatttcttttag
species | Glycine max |
transcript | GLYMA08G39420.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCGCAG GATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTEST: gi|193643170|gb|FK590760.1|FK590760
genomic: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAGgtgaggttct ... tttcttttagGATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACT
EST: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCGCAG GATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTEST: gi|213592591|gb|DB961851.1|DB961851
genomic: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAGgtgaggttct ... tttcttttagGATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACT
EST: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAG GATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTEST: gi|209712774|gb|BW681630.1|BW681630
genomic: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAGgtgaggttct ... tttcttttagGATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACT
EST: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAG GATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTEST: gi|213601629|gb|DB980886.1|DB980886
genomic: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAGgtgaggttct ... tttcttttagGATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACT
EST: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAG GATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTEST: gi|6963774|gb|AW432467.1|AW432467
genomic: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAGgtgaggttct ... tttcttttagGATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACT
EST: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAG GATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTEST: gi|6072538|gb|AW101925.1|AW101925
genomic: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAGgtgaggttct ... tttcttttagGATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACT
EST: TTTTGATAACCAGGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAG GATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTEST: gi|193687919|gb|FK634422.1|FK634422
genomic: TCTTGATAACCA-GCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAGgtgaggttct ... tttcttttagGATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACT
EST: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCGCAG GATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTEST: gi|209712773|gb|BW681629.1|BW681629
genomic: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAGgtgaggttct ... tttcttttagGATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACT
EST: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAG GATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTEST: gi|208163442|gb|GD959806.1|GD959806
genomic: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAGgtgaggttct ... tttcttttagGATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACT
EST: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAG GATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTEST: gi|10843502|gb|BF066791.1|BF066791
genomic: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAGgtgaggttct ... tttcttttagGATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACT
EST: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCGCAG GATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTEST: gi|12773264|gb|BG238191.1|BG238191
genomic: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAGgtgaggttct ... tttcttttagGATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACT
EST: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAG GATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTEST: gi|209720176|gb|BW651178.1|BW651178
genomic: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAGgtgaggttct ... tttcttttagGATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACT
EST: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAG GATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTEST: gi|192321731|gb|FK013165.1|FK013165
genomic: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAGgtgaggttct ... tttcttttagGATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACT
EST: TTCTTGATAACCAGCTGAAGTTTCCTAGCCCACTCCTGTTACCTGCCCAG GATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACTEST: gi|193725323|gb|FK661885.1|FK661885
genomic: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAGgtgaggttct ... tttcttttagGATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGATCTGGTCAAAACT
EST: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCGCAG GATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGAT
genomic: TTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAGgtgaggttct ... tttcttttagGATGCTGTTACTCCATTGTCTGAAGCAGAAGCAGTTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGGTTGGATATAGCTCTCAGGGTTCTGGATCCACACTTATTATGCCATTTCTTGATAACCAGCTGAAGTCTCCTAGCCCACTCCTGTTACCTGCCCAGgtgaggttctgaaattggcgcttttcttgaaatatttgattcttcaactttattgactgacatgcctacattaaaaaatatgatttcttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG