1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGCTGAGAAGTGTGTGATGGCTTCATCTGGCTTTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTGgtgagtcgaaaacttaaaacaacaacttagtagtgcttgtgaattcttttggggttgcttagaatgttacaaactacaatattctattttaatctcttgg...
species | Glycine max |
transcript | GLYMA08G39420.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTG ATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAGEST: gi|207788582|gb|GD763332.1|GD763332
genomic: TTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTGgtgagtcgaa ... ctgaatgcagATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAG
EST: TTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTG ATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAGEST: gi|207799339|gb|GD769178.1|GD769178
genomic: TTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTGgtgagtcgaa ... ctgaatgcagATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAG
EST: TTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTG ATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTACAEST: gi|192321731|gb|FK013165.1|FK013165
genomic: TTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTGgtgagtcgaa ... ctgaatgcagATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCT-CA
EST: TTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTG ATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAGEST: gi|19345885|gb|BM890765.1|BM890765
genomic: TTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTGgtgagtcgaa ... ctgaatgcagATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAG
EST: TTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTG ATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAGEST: gi|18723284|gb|BM523458.1|BM523458
genomic: TTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTGgtgagtcgaa ... ctgaatgcagATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAG
EST: TTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTG ATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAGEST: gi|298165462|gb|HO011511.1|HO011511
genomic: TTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTGgtgagtcgaa ... ctgaatgcagATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAG
EST: TTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTG ATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAGEST: gi|193614307|gb|FK562279.1|FK562279
genomic: TTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTGgtgagtcgaa ... ctgaatgcagATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAG
EST: TTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTG ATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATEST: gi|120534402|gb|EH262535.1|EH262535
genomic: TTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTGgtgagtcgaa ... ctgaatgcagATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGAT
EST: TTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTG ATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAG
genomic: TTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTGgtgagtcgaa ... ctgaatgcagATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTGAGAAGTGTGTGATGGCTTCATCTGGCTTTCAAGCTGATGTCAAAGCTTTGCAGAAGGTTTTGTCTGCTAGGCATTTGgtgagtcgaaaacttaaaacaacaacttagtagtgcttgtgaattcttttggggttgcttagaatgttacaaactacaatattctattttaatctcttgg
- - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggttg