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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCAAAGTGAGATGGGAGGAAAAATGCCATCCGTCAAGCCAACTgtgaggacccttttgaaaccttttacaaaaccaatttgattcaagtttaggagttattattggaacataatcaaggtgattttttttatgcgcag

Basic information

species Glycine max
transcript GLYMA08G39340.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193420975|gb|FK390982.1|FK390982
EST:     TTCAAAGTGAGATGGGAGGAAAAATGCCATCCGTCAAGCCAACT                         GCATTGCGGTTCTAGGGGAGTTTTAATCCAACAGTTACAGGCATAACAATT
genomic: TTCAAAGTGAGATGGGAGGAAAAATGCCATCCGTCAAGCCAACTgtgaggaccc ... ttatgcgcagGCATTGCGGTTCTATGGGAGTTTTAATCCAACAGTTACAGGCATAACAATT
EST: gi|193609855|gb|FK565321.1|FK565321
EST:     AAAGTGAGATGGGNGGAAAAATGCCATCCGTCAAGCCAACT                         GCATTGCGGTTCTATGGGAGTTTTAATCCAACAGTTACAGGCATAACAATT
genomic: AAAGTGAGATGGGAGGAAAAATGCCATCCGTCAAGCCAACTgtgaggaccc ... ttatgcgcagGCATTGCGGTTCTATGGGAGTTTTAATCCAACAGTTACAGGCATAACAATT
EST: gi|193500009|gb|FK465136.1|FK465136
EST:     AAAGTGAGATGGGAGGAAAAATGCCATCCGTCAAGCCAACT                         GCATTGCGGTTCTATGGGAGTTTTAATCCAACAGTTACAGGCATAACAATT
genomic: AAAGTGAGATGGGAGGAAAAATGCCATCCGTCAAGCCAACTgtgaggaccc ... ttatgcgcagGCATTGCGGTTCTATGGGAGTTTTAATCCAACAGTTACAGGCATAACAATT
EST: gi|193435512|gb|FK401622.1|FK401622
EST:     CCGATTCAAAGTGAGATGGGAGGAAAAAATGCCATCCGTCAAGCCAACT                         GCATTGCGGTTCTATGGGAGTTTTAATCCAACAGTTACAGGCATAACAATT
genomic: CCGATTCAAAGTGAGATGGGAGG-AAAAATGCCATCCGTCAAGCCAACTgtgaggaccc ... ttatgcgcagGCATTGCGGTTCTATGGGAGTTTTAATCCAACAGTTACAGGCATAACAATT
EST: gi|207778769|gb|GD746770.1|GD746770
EST:     TTCAAAGTGAGATGGGAGGAAAAATAGCCATCCGTCAAGCCAACT                         GCATTGCGGTTCTATGGGAGTTTTAATCCAACAGTTACAGGCATAACAATT
genomic: TTCAAAGTGAGATGGGAGGAAAAAT-GCCATCCGTCAAGCCAACTgtgaggaccc ... ttatgcgcagGCATTGCGGTTCTATGGGAGTTTTAATCCAACAGTTACAGGCATAACAATT
EST: gi|193310602|gb|FK276766.1|FK276766
EST:     ATTCAAAGTGAGATGGGAGGAAAAATGCCATCCGTCAAGCCAACT                         GCATTGCGGTTCTATGGGAGTTTTAATCCAACTAGTTTACTAGGCATAACA
genomic: ATTCAAAGTGAGATGGGAGGAAAAATGCCATCCGTCAAGCCAACTgtgaggaccc ... ttatgcgcagGCATTGCGGTTCTATGGGAGTTTTAATCCAAC-AGTT-AC-AGGCATAACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTCAAAGTGAGATGGGAGGAAAAATGCCATCCGTCAAGCCAACTgtgaggacccttttgaaaccttttacaaaaccaatttgattcaagtttaggagttattattggaacataatcaaggtgattttttttatgcgcag

- - - -  GAGATG
- - - - - - -  GGAGGA