Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCTTTGATATTTTGGGAAACGAGGCGCTCCGACTTTGGAGTGTCCATGAGTCATCATGTTGCTACTGTAATTCTCATTGTTCTGTCTTACATTTTCAGgtatgttttttcattcacttgagtgtttctcttgtcattcaagcttttttgtcctcaagtttgatcagttttgtagattttatttatttcattttgtctg...

Basic information

species Glycine max
transcript GLYMA08G36370.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G36370.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G444643_T01 (Zea mays), 5'ss of exon 4
TTGCTTTGATATTTTGGGAAACGAGGCGCTCCGACTTTGGAGTGTCCATGAGTCATCATGTTGCTACTGTAATTCTCATTGTTCTGTCTTACATTTTCAGgtatgttttttcattcacttgagtgtttc-tcttgtcattcaa-gcttttttgtcctcaagtttgatcagttttgtagattttatttatttcattttgtctg--------------------------------------------------------------
||||  | || ||||||||||| ||||| || |||||||||||||| |||   |||||||||||||||||  |||| |||||||| |||||| | ||||||||||||  ||   |    | | ||||   | |||| |||    |  |||    | |||   ||  |||   |||   ||||  || ||| | |||| |                                                                 
TTGCACTTATGTTTTGGGAAACAAGGCGTTCAGACTTTGGAGTGTCAATGTCACATCATGTTGCTACTGTTGTTCTGATTGTTCTATCTTACGTGTTCAGgtatgttccttatcttgaataactgttagattttgttattttgtgaatttgcaacatcattcttagtcatcattgcttattt-gttaattcctttttctaactcatctcataattcatagacaatttttttaacaatcttctgatcttctccttggtcaaccag

upper sequence: GLYMA08G36370.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G170868_T01 (Zea mays), 5'ss of exon 3
TTGCTTTGATATTTTGGGAAACGAGGCGCTCCGACTTTGGAGTGTCCATGAGTCATCATGTTGCTACTGTAATTCTCATTGTTCTGTCTTACATTTTCAGgtatgttttttcattcacttgagtgtttctcttgtcattcaagcttttttgtcctcaagtttgatcagttttgtagattttatttatt-tcatt--ttgtctg-----------------------------------------------------------------------------
||||  | || ||||||||||| ||||| || |||||||||||||| |||   |||||||||||||||||  | || |||||||| |||||| | ||||||||||||| ||   |    | | | |||  ||  |  |||| |  |||    | |||  ||  |||||| | | |||  || ||  |  |||||  |  | ||                                                                             
TTGCACTTATGTTTTGGGAAACAAGGCGTTCAGACTTTGGAGTGTCAATGTCACATCATGTTGCTACTGTCGTCCTGATTGTTCTATCTTACGTGTTCAGgtatgtttcttatcttgaataact-tttagctgttgtttcatgaatttgcaacatca--ttgtatcagtataggagaacttcttagtcatcattgctgatttgttaatttctttttctaactcctttcataattcgtagacaatgttttaactaaaatcttcttttccttcgtcaaccag

upper sequence: GLYMA08G36370.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G13580.2 (Arabidopsis thaliana), 5'ss of exon 3
TTGCTTTGATATTTTGGGAAACGAGGCGCTCCGACTTTGGAGTGTCCATGAGTCATCATGTTGCTACTGTAATTCTCATTGTTCTGTCTTACATTTTCAGgtatgttttttcattcacttgagtgtttctcttgtcattcaa----gcttttttgtcctcaagtttgatcagttttgtagattttatttatttcattttgtctg-
||||| || | || |||||||||||||| || || |||||||| || ||| |||||||| |||| ||| | ||||| |||||||| || ||| | |  ||||||| ||      |||| |     | | |  ||  |  ||     | ||  || |   ||  ||   |   | || | | || | ||| | |   |   | |  
TTGCTCTGGTTTTCTGGGAAACGAGGCGTTCTGATTTTGGAGTTTCAATGGGTCATCATATTGCCACTCTTATTCTTATTGTTCTCTCATACGTATGTAGgtatgcttccatcgtcacatcctattctatactgaaaaacagaactgattccttttgtccacattgttttgatcttcttgtttctttttctctttatcgctgtag

upper sequence: GLYMA08G36370.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0010g01110.t01 (Vitis vinifera), 5'ss of exon 3
TTGCTTTGATATTTTGGGAAACGAGGCGCTCCGACTTTGGAGTGTCCATGAGTCATCATGTTGCTACTGTAATTCTCATTGTTCTGTCTTACATTTTCAGgtatgttttttcattcacttgagtgtttctcttgtcat--tcaagcttttttgtcctcaagtttgatcagttttgtagattttatttatttcattttgtctg-
|||||||||| ||||||||||| ||||| || || ||||||||||| ||| |||||||||| || ||| | ||||||||||| ||||||||||| |||||||||||||        | || ||  | |  |||| |||  ||         |  ||   ||  || |  |||      | ||||  ||||| |  |       
TTGCTTTGATTTTTTGGGAAACAAGGCGGTCTGATTTTGGAGTGTCAATGGGTCATCATGTGGCAACTTTTATTCTCATTGTGCTGTCTTACATATTCAGgtatgtttggcag--aagttcagcttgtagcttggcatgttctgaacaccataaccatgaggatg-tgggttcataccaatttacctatttaaagtaaaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151402795|gb|EV272608.1|EV272608
EST:     AGTCATCATGTTGCTACTGTAATTCTCATTGTTCTGTCTTACATTTTCAG                         GTTTGCACGTGTTGGATCATTGGTTTTAGCACTTCATGA
genomic: AGTCATCATGTTGCTACTGTAATTCTCATTGTTCTGTCTTACATTTTCAGgtatgttttt ... acaaattcagGTTTGCACGTGTTGGATCAGTGGTTTTAGCACTTCATGA