1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATGTGATATTAACGAGGATATGGGAATGAAGTTCAATGAGTTTATTGTACTTCTTTGTGTTGTCTACCTTCTCAAGAATGACCCTGCAGCTCTTCATGCTgtatcctagcacacattatctgtgccgtattagtttcattaccatatgaggctatttatgcaatataaggagagatttttaaagaattgaattttgaaag...
species | Glycine max |
transcript | GLYMA08G33830.2 |
intron # | 3 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: TCTTTTGTGTTGTCTACCTTCTCAAGAATGACCCTGCAGCTCTTCATGCT AAATCACGAATTGGGATGCCAAAGCTGGAGGGCACATTTGAGACTTTGGTTEST: gi|254316174|gb|GR827711.1|GR827711
genomic: TCTTT-GTGTTGTCTACCTTCTCAAGAATGACCCTGCAGCTCTTCATGCTgtatcctagc ... acttccctagAAATCACGAATTGGGATGCCAAAGCTGGAGGGCACATTTGAGACTTTGGTT
EST: TTCTTTGTGTTGTCTACCTTCTCAAGAATGACCCTGCAGCTCTTCATGCT AAATCACGAATTGGGATGCCAAAGCTGGAGGGCACATTTGAGACTTTGGTTEST: gi|193478531|gb|FK447558.1|FK447558
genomic: TTCTTTGTGTTGTCTACCTTCTCAAGAATGACCCTGCAGCTCTTCATGCTgtatcctagc ... acttccctagAAATCACGAATTGGGATGCCAAAGCTGGAGGGCACATTTGAGACTTTGGTT
EST: TTCTTTGTGTTGTCTACCTTCTCAAGAATGACCCTGCAGCTCTTCATGCT AAATCACGAATTGGGATGCCAAAGCTGGAGGGCACATTTGAGACTTTGGTTEST: gi|298170086|gb|HO018710.1|HO018710
genomic: TTCTTTGTGTTGTCTACCTTCTCAAGAATGACCCTGCAGCTCTTCATGCTgtatcctagc ... acttccctagAAATCACGAATTGGGATGCCAAAGCTGGAGGGCACATTTGAGACTTTGGTT
EST: TTCTTTGTGTTGTCTACCTTCTCAAGAATGACCCTGCAGCTCTTCATGCT AAATCACGAATTGGGATGCCAAAGCTGGAGGGCACATTTGAGACTTTGGTTEST: gi|298194650|gb|HO043122.1|HO043122
genomic: TTCTTTGTGTTGTCTACCTTCTCAAGAATGACCCTGCAGCTCTTCATGCTgtatcctagc ... acttccctagAAATCACGAATTGGGATGCCAAAGCTGGAGGGCACATTTGAGACTTTGGTT
EST: TTCTTTGTGTTGTCTACCTTCTCAAGAATGACCCTGCAGCTCTTCATGCT AAATCACGAATTGGGATGCCAAAGCTGGAGGGCACATTTGAGACTTTGGTTEST: gi|192305727|gb|FG995697.1|FG995697
genomic: TTCTTTGTGTTGTCTACCTTCTCAAGAATGACCCTGCAGCTCTTCATGCTgtatcctagc ... acttccctagAAATCACGAATTGGGATGCCAAAGCTGGAGGGCACATTTGAGACTTTGGTT
EST: TTCTTTGTGTTGTCTACCTTCTCAAGAATGACCCTGCAGCTCTTCATGCT AAATCACGAATTGGGATGCCAAAGCTGGAGGGCACATTTGAGACTTTGGTTEST: gi|13481965|gb|BG511308.1|BG511308
genomic: TTCTTTGTGTTGTCTACCTTCTCAAGAATGACCCTGCAGCTCTTCATGCTgtatcctagc ... acttccctagAAATCACGAATTGGGATGCCAAAGCTGGAGGGCACATTTGAGACTTTGGTT
EST: TTCTTTGTGTTGTCTACCTTCTCAAGAATGACCCTGCAGCTCTTCATGCT AAATCACGAATTGGGATGCCAAAGCTGGAGGGCACATTTGAGACTTTGGTTEST: gi|22523171|gb|BU081982.1|BU081982
genomic: TTCTTTGTGTTGTCTACCTTCTCAAGAATGACCCTGCAGCTCTTCATGCTgtatcctagc ... acttccctagAAATCACGAATTGGGATGCCAAAGCTGGAGGGCACATTTGAGACTTTGGTT
EST: TTCTTTGTGTTGTCTACCTTCTCAAGAATGACCCTGCAGCTCTTCATGCT AGATCACGAATTGTGATGCCA
genomic: TTCTTTGTGTTGTCTACCTTCTCAAGAATGACCCTGCAGCTCTTCATGCTgtatcctagc ... acttccctagAAATCACGAATTGGGATGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTGATATTAACGAGGATATGGGAATGAAGTTCAATGAGTTTATTGTACTTCTTTGTGTTGTCTACCTTCTCAAGAATGACCCTGCAGCTCTTCATGCTgtatcctagcacacattatctgtgccgtattagtttcattaccatatgaggctatttatgcaatataaggagagatttttaaagaattgaattttgaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC