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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGATGCTCTATGGTCGTACACCATTCAGAGGAAAGAATAGACAGAAGACATTTTCCAATATTTTACACAAGGATCTTACCTTTCCAAGCAGCATTCCGgtaaataacaaaatattagtagttgaactttaaaatatttatagttgtttgccatccaattcattttccaaagagaggggttcctatttcagaagttttt...

Basic information

species Glycine max
transcript GLYMA08G33520.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G33520.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os04g23890.1 (Oryza sativa), 5'ss of exon 20
TGAGATGCTCTATGGTCGTACACCATTCAGAGGAAAGAATAGACAGAAGACATTTTCCAATATTTTACACAAGGATCTTACCTTTCCAAGCAGCATTCCGgtaaataacaaaatattagt-agttgaactttaaaatatttatagttgtttgccatccaattcattttccaaagagag---gggttcctatttcagaagttttt
||||||||| ||||| |||||||| ||| |||||||||| ||  | ||||||||||  || ||  | ||||| || ||||| ||||| || |||||||||||||  |      | ||||  |  ||  |  | || |  ||   ||  |  ||   |||||   |||| || |  |        || | | | || | |||   
TGAGATGCTGTATGGGCGTACACCTTTCCGAGGAAAGAACAGGAAAAAGACATTTTATAACATACTGCACAAAGACCTTACATTTCCCAGTAGCATTCCGgtaagaacttcttttttagagaaatggccagtgaagt--ttcctgtcat--gcaggccaatattttttgcatactgtattcaatttgcaactacaaaggttgag

upper sequence: GLYMA08G33520.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv03s0038g04210.t01 (Vitis vinifera), 5'ss of exon 20
TGAGATGCTCTATGGTCGTACACCATTCAGAGGAAAGAATAGACAGAAGACATTTTCCAATATTTTACACAAGGATCTTACCTTTCCAAGCAGCATTCCGgtaaa-taacaaaatattagtagttgaac-----tttaaaatatttatagttgtttgccatccaattcattttccaaagagaggggttcctatttcagaagttttt
||||||||| ||||| ||||| || ||||||||||||||||| ||||||||||||||||| || || ||||| ||||| || ||||| || |||||||||||||| | |  |  |  || |   | | |      |||| ||| ||    |  ||   ||| || ||   |    |||      |     ||   |||| |     
TGAGATGCTTTATGGCCGTACTCCTTTCAGAGGAAAGAATAGGCAGAAGACATTTTCCAACATCTTGCACAAAGATCTGACTTTTCCCAGTAGCATTCCGgtaaaatcatcactttctaatgcattaccactgtcttaagataatttc--tctttgatcattcacttatgtacttaaaagtgttgagcagtacagcagagga----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|46492935|gb|CN472491.1|CN472491
EST:     CATTTTCCAATATTTTACACAAGGATCTTACCTTTCCAAGCAGCATTCCG                         GCTAGTCTTGCGGCCAGGCAGTTGATTAATGCACTACTGCAAAGAGACCCA
genomic: CATTTTCCAATATTTTACACAAGGATCTTACCTTTCCAAGCAGCATTCCGgtaaataaca ... aaattctcagGCTAGTCTTGCGGCCAGGCAGTTGATTAATGCACTACTGCAAAGAGACCCA