Sequence
atgc intronic sequence ATGC exonic sequenceATTCAGCTATAATAAATCCTGGGAATAAATACAGAAGAGCTTTGGTTGCAGCCTCCATTGGAAGCTACGGATCTTACCTTGCTGATGGCTCAGAATACAGgtggttctacacttctcaaatttgacagtttggttcctgttcatcctgcggaagaattgctttgtttattttctgtatgtttacggaatttattcatattaatatcttcttgtag
Basic information
species | Glycine max |
transcript | GLYMA08G30150.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G30150.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os03g12110.2 (Oryza sativa), 5'ss of exon 3
ATTCAGCTATAATAAATCCTGGGAATAAATACAGAAGAGCTTTGGTTGCAGCCTCCATTGGAAGCTACGGATCTTACCTTGCTGATGGCTCAGAATACAGgtgg-ttctacacttc-----tcaaatttgacagtttggttcctgttcatcctgc---ggaagaattgctttgtttattttctgtatgtttacggaatttattcatattaatatcttcttgtag
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AGTCGACGCTGAGGAAGTCCAAGCCTGTTTACAACCGTGCTCTGGTCGCCGCATCCATTGGGAGCTATGGAGCTTACCTTGCCGATGGCTCAGAGTACAGgtaacttctaagattcagcactgcaaagccatggattagccatggatcggcacgcattgtaaccttaacctcgtatataatattt-tgcttgtgtcattgatgcaacattgtatctgacag---
upper sequence: GLYMA08G30150.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0011g03500.t01 (Vitis vinifera), 5'ss of exon 3
ATTCAGCTATAATAAATCCTGGGAATAAATACAGAAGAGCTTTGGTTGCAGCCTCCATTGGAAGCTACGGATCTTACCTTGCTGATGGCTCAGAATACAGgtg------gttctacacttctcaaatttgaca-gtttggttcctgttcatcctgcggaagaattgctttgtt-tattttctgtatgtttacggaatttattcatattaat--atcttcttgtag--------------------------------------
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ATGTCACGAAAAGGGTTCCTGGACATGGCTATAATCGAGCTTTAGTCGCAGCTTCCATAGGAAGCTATGGAGCATATCTTGCTGATGGTTCAGAATACAGgtgccagtcatcagccaactcttttcttagaaacagttggatcatatacagatttaatcgttactgatatccaatatcttagttacataaacaacaat-gttcttgttaaatgaacaacttgtattgtaatcttacttgtaattcatttatctttttctccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151406545|gb|EV276360.1|EV276360EST: GCCTCCATTGGAAGCTACGGATCTTACCTTGCTGATGGCTCAGAATACAG TGGCTGCTATGGACCTGATGTAAATTTAAAGAAGTTGAAGGATTTTCATCG
genomic: GCCTCCATTGGAAGCTACGGATCTTACCTTGCTGATGGCTCAGAATACAGgtggttctac ... cttcttgtagTGGCTGCTATGGACCTGATGTAAATTTAAAGAAGTTGAAGGATTTTCATCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTCAGCTATAATAAATCCTGGGAATAAATACAGAAGAGCTTTGGTTGCAGCCTCCATTGGAAGCTACGGATCTTACCTTGCTGATGGCTCAGAATACAGgtggttctacacttctcaaatttgacagtttggttcctgttcatcctgcggaagaattgctttgtttattttctgtatgtttacggaatttattcatattaatatcttcttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT