Sequence
atgc intronic sequence ATGC exonic sequenceCGTCATCTGGTTTCTTTGGTTGGTTACTGTATATCCGAGCATCAGAGATTGCTTGTATATGACTATGTTCCCAACGATACTCTTCACTACCATCTCCATGgtaagatagatatctctgattaaataatttgaataaacaaaaataatgaattcattaccaatttacaaaacaagctataaaacatatacactgagaccgg...
Basic information
species | Glycine max |
transcript | GLYMA08G28600.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G28600.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G355636_T01 (Zea mays), 5'ss of exon 3
CGTCATCTGGTTTCTTTGGTTGGTTACTGTATATCCGAGCATCAGAGATTGCTTGTATATGACTATGTTCCCAACGATACTCTTCACTACCATCTCCATGgtaagatagatatc-tctgattaaataatttgaa-------taaacaaaaataatgaattcattaccaatttaca-aaacaagctataaaacatatacactg--agaccgg----------------------------------------------------------------------------
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CGCCATCTAGTATCTCTTGTAGGGTATTGCATTTCAGATGAGCAGAGATTGCTTGTCTATGATTTTGTGCCCAACAACACGCTTCACTACCATCTTCATGgtatgttatatgttgtgcaggagcattctttttaccacctctgttccaaaatatttgtacttctagctatggacatggacaagtatttgtgtatgtacataaccagacctgcaattattttggaacgaggtagttctttgtccggactaaacatttaatgcatacccatattgatttttcatcatag
upper sequence: GLYMA08G28600.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G872442_T02 (Zea mays), 5'ss of exon 3
CGTCATCTGGTTTCTTTGGTTGGTTACTGTATATCCGAGCATCAGAGATTGCTTGTATATGACTATGTTCCCAACGATACTCTTCACTACCATCTCCATGgtaagatagatatctctgattaaataatttgaataaacaaaaataatgaattca--ttaccaatttaca---aaacaagctataaaacatatacactgagaccgg
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CGCCATCTAGTTTCTCTTGTGGGGTATTGCATTTCAGATGACCAGAGATTGCTTGTCTACGATTTTGTGCCCAACGACACACTTCACTATCATCTTCATGgtatgctg--tgctttttat-atattgtgcaagagaactttttttacagcctctgttttccaatatatatgtagttctactgttctagctatgtacctgggca--
upper sequence: GLYMA08G28600.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G38560.1 (Arabidopsis thaliana), 5'ss of exon 2
CGTCATCTGGTTTCTTTGGTTGGTTACTGTATATCCGAGCATCAGAGATTGCTTGTATATGACTATGTTCCCAACGATACTCTTCACTACCATCTCCATGgtaagatagatatctctgattaaataatttgaataaacaaaaataatgaattcattaccaatttacaaaacaagctataaaacatatacactgagaccgg
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CGCCATTTGGTTACACTAGTTGGTTATTGCATCTCAGAGCAACATAGGTTGCTTGTATATGATTATGTACCTAACAACACTCTCCATTATCATCTCCATGgtac--caaatgcctc----------atcttcttaaac------cataaacttatccttttataactacataaacttcaatgcatgtgtatgcgcag---
upper sequence: GLYMA08G28600.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0083g00330.t01 (Vitis vinifera), 5'ss of exon 2
CGTCATCTGGTTTCTTTGGTTGGTTACTGTATATCCGAGCATCAGAGATTGCTTGTATATGACTATGTTCCCAACGATACTCTTCACTACCATCTCCATGgtaagatagatatctctgattaaataatttgaataaac---aaaaataatgaattcattaccaatttacaaaacaagctataaaacatatacactgagaccgg--
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CGGCATTTGGTTTCACTTGTGGGTTACTGTATATCTGAGCATCAAAGATTACTTGTCTATGATTTCGTACCAAACGATACCCTTCATTACCATCTCCATGgtaagat--atacttttgagtttacaaaaagggtaaaccttgaattttaatagttgaactcggatgcataat-catgcaatt--atgtatgctctcaaataaaatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208270932|gb|GE069912.1|GE069912EST: GCTTGTATATGACTATGTTCCCAACGATACTCTTCACTACCATCTCCATG GTGAAAATAGACCAGTTTTAGATTGGCCTACTAGAGTCAAGGTTGCTGCTG
genomic: GCTTGTATATGACTATGTTCCCAACGATACTCTTCACTACCATCTCCATGgtaagataga ... attttcgcagGTGAAAATAGACCAGTTTTAGATTGGCCTACTAGAGTCAAGGTTGCTGCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGTCATCTGGTTTCTTTGGTTGGTTACTGTATATCCGAGCATCAGAGATTGCTTGTATATGACTATGTTCCCAACGATACTCTTCACTACCATCTCCATGgtaagatagatatctctgattaaataatttgaataaacaaaaataatgaattcattaccaatttacaaaacaagctataaaacatatacactgagaccgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaataa