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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTAAGAAGGATAACAAAGTTGAATCAAAGGAAACTAAAGGAGCCACCCTCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtatttttgttcatatgccacaaggtcttgtcatgctctctcacttgaaattaggttttgtttatatgcattatgttttgtgctatttaggaattttaaa...

Basic information

species Glycine max
transcript GLYMA08G28320.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13181521|gb|BG352861.1|BG352861
EST:     TCAACGAGCTTGTTGAGCTAAAAAATTTTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
genomic: TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtatttttgt ... tgaatttcagTGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
EST: gi|27808906|gb|CB063328.1|CB063328
EST:     TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCATAAAGATCTTTATCTC
genomic: TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtatttttgt ... tgaatttcagTGCAGGAAGCATAAAGATCTTTATCTC
EST: gi|7283962|gb|AW596563.1|AW596563
EST:     TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCATAAAGATCTNTATCTC
genomic: TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtatttttgt ... tgaatttcagTGCAGGAAGCATAAAGATCTTTATCTC
EST: gi|151409158|gb|EV278966.1|EV278966
EST:     TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
genomic: TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtatttttgt ... tgaatttcagTGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
EST: gi|17021807|gb|BM092841.1|BM092841
EST:     TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
genomic: TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtatttttgt ... tgaatttcagTGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
EST: gi|298197751|gb|HO039290.1|HO039290
EST:     TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
genomic: TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtatttttgt ... tgaatttcagTGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
EST: gi|151399665|gb|EV269536.1|EV269536
EST:     TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
genomic: TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtatttttgt ... tgaatttcagTGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
EST: gi|207684827|gb|GD664730.1|GD664730
EST:     TCAACGAGCTTGTTGAGCT-AAAAATTGTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
genomic: TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtatttttgt ... tgaatttcagTGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
EST: gi|213619549|gb|DB957250.1|DB957250
EST:     TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
genomic: TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtatttttgt ... tgaatttcagTGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
EST: gi|17154077|gb|BM144010.1|BM144010
EST:     TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
genomic: TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtatttttgt ... tgaatttcagTGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
EST: gi|15815223|gb|BI787498.1|BI787498
EST:     TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
genomic: TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtatttttgt ... tgaatttcagTGCAGGAAGCATAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAATGGC
EST: gi|7458614|gb|AW666064.1|AW666064
EST:     TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAG                         TGCAGGAAGCATAAAGATCTTTATCTCT
genomic: TCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtatttttgt ... tgaatttcagTGCAGGAAGCATAAAGATCTTTATCTCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGTAAGAAGGATAACAAAGTTGAATCAAAGGAAACTAAAGGAGCCACCCTCAACGAGCTTGTTGAGCTAAAAAATTGTTCCTCTTGTTTATTTTTTGAGgtatttttgttcatatgccacaaggtcttgtcatgctctctcacttgaaattaggttttgtttatatgcattatgttttgtgctatttaggaattttaaa

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT