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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTGATCTAAAGCTGCCGGATTCTTTTGATCAACTGGTTTCTGATATGAAGAACAATCAGTATGATGCAAAAACTTTTGCATTCATGCTAAGGGGAATGgtaagttgcttgtttcagttaacacaaagtgttgtctgtatcttggttaattaatattgagtaaggaagaggttgtctcaaactgaattctattgacatt...

Basic information

species Glycine max
transcript GLYMA08G26480.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G26480.1 (Glycine max), 5'ss of exon 3
lower sequence: AT5G15470.1 (Arabidopsis thaliana), 5'ss of exon 3
ACCTGATCTAAAGCTGCCGGATTCTTTTGATCAACTGGTTTCTGATATGAAGAACAATCAGTATGATGCAAAAACTTTTGCATTCATGCTAAGGGGAATGgtaagttgcttgtttcagttaacacaaagtgttgtc-tgtatcttggttaattaatattgagtaaggaagaggttgtctcaaactgaattctattg-acatt-
|  || | | ||||| ||  ||||||||  |||||| ||||| ||||||||||| || || |||||||||||||| |||||  |  ||||  | |  |||||| | |  |||| | |  | | |  |  | |  || |  || ||   || ||   ||  |      |   | || | |  |  |  |   ||||   |||  
AGATGGTTTGAAGCTTCCAAATTCTTTTAGTCAACTTGTTTCCGATATGAAGAATAACCACTATGATGCAAAAACATTTGCTCTTGTGCTGCGAGCCATGgtacgct--ttgtctaatctgaaattatttctgatcctacatattatatacttg-catcaaaaggacatttgtttttgtttagttagaaaatattttgcatct

upper sequence: GLYMA08G26480.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G01040.2 (Arabidopsis thaliana), 5'ss of exon 3
ACCTGATCTAAAGCTGCCGGATTCTTTTGATCAACTGGTTTCTGATATGAAGAACAATCAGTATGATGCAAAAACTTTTGCATTCATGCTAAGGGGAATGgtaagttgcttgtttcagttaacacaaagtgttgtctgtatcttggtt---aattaatattgagtaaggaagaggttgtctcaaactgaattctattgacatt
|  || | ||||||| || || ||||||  |||||||||||| |||||||||||||| || |||||||| ||||| |||||  || |  |  | |  ||||||  ||   |  |    | || | ||||  |    ||||  ||| |    || | |||||   |  |  |    |  | |  ||| |               
AGATGGTTTAAAGCTTCCAGAGTCTTTTAGTCAACTGGTTTCGGATATGAAGAACAACCACTATGATGCTAAAACATTTGCCCTCGTATTTCGAGCTATGgtacattctctaatct--tcaata-aaagcttaaattgtagattgatccgaaacttatatttgatttg--attactctttttgaacag---------------

upper sequence: GLYMA08G26480.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0108g01520.t01 (Vitis vinifera), 5'ss of exon 3
ACCTGATCTAAAGCTGCCGGATTCTTTTGATCAACTGGTTTCTGATATGAAGAACAATCAGTATGATGCAAAAACTTTTGCATTCATGCTAAGGGGAATGgtaagttgcttgtttcagtta-acacaaagtgttgtctgtatcttggttaattaatattgagtaaggaagaggttgtctcaaactgaattctattgacatt-
|  || ||||||||| || ||| | ||   |||||| |||||||| ||||||||||| |||||||||||||| || ||||| |||||| || ||| ||||||| ||| | | || |      ||| |   | || | | ||||||  ||   | |  ||      | |||    |||||     | |||    |  || || 
AGATGGTCTAAAGCTTCCAGATACATTCAGTCAACTTGTTTCTGAAATGAAGAACAAACAGTATGATGCAAAGACATTTGCTTTCATGTTACGGGCAATGgtacgtttcatattaccacagcacatattatattttgtttatcttt-ttggatgaggtttgtcctgaaagttagtgtctttgttt-aatggcttatacttta