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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCTATTCATGACTTAGATTGGTCCTGCCCAACTGCAATCGTGGTTGGGAATGAAAATAGgttatttccttcattttcctgatgctcaatgtttgttgttcatggagtactgagtctgctgactattagtagtcagaggataaccaactgtctctacattgaattaaaatattaaataattctcatatttcctgtaacttaggttttactttctgctcaggttttgtatgtatttaacagtggctatttcttgttgcag

Basic information

species Glycine max
transcript GLYMA08G26320.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G26320.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0108g01380.t01 (Vitis vinifera), 5'ss of exon 3
GTTTCTATTCATGACTTAGATTGGTCCTGCCCAACTGCAATCGTGGTTGGGAATGAAAATAGgttatttccttcattttcctgatgctcaatgtttgttgttcatggagtactgagtctgctgactattagtagtcagagga-taaccaactgtctctacattgaattaaaatattaaataattctcatatttcctgtaacttaggttttactttctgctcaggttttgtatgtatttaacagtggctatttcttgttgcag
||||||||| ||||| | |||||| |||||||||||||||| || ||||| ||||||||||||| ||   | || ||||     |    |  | |   ||||||   | |    | |||  | | |   |  | |      | |       | ||   |||     ||   ||||  | | |||  ||| | |||| | | ||  |||| | | ||||  ||  |  ||     |                           
GTTTCTATTTATGACATGGATTGGACCTGCCCAACTGCAATAGTTGTTGGAAATGAAAATAGgtgatcatcctctttttt----tatctacagct--ctgttcacaaaat-tgaaatctattcagttacatcatttgatctacttgttctttttccagacacatggttg--atatctatttattgacat-tgtcctatgatttttgttt-aatatctg--caattcctgatgacag--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120530667|gb|EH258800.1|EH258800
EST:     GACTTAGATTGGTCCTGCCCAACTGCAATCGTGGTTGGGAATGACAATAG                         GGGTATTAGTGATGAGGCATTGGAGCTGTCAGATTTGCATTGCAGTATTCC
genomic: GACTTAGATTGGTCCTGCCCAACTGCAATCGTGGTTGGGAATGAAAATAGgttatttcct ... cttgttgcagGGGTATTAGTGATGAGGCATTGGAGCTGTCAGATTTGCATTGCAGTATTCC