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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCTTGCAATTCCTGCCATTCCTTTAACCATGTCAGCTGGACTTCTATTTGGATCTGTTGTCGGCACTATCATAGTCTCTATCAGCGGAACAgtgagtcaatttggatcatatagttgactgcattatctacaaatatttttaattctattcatatttttaaggttaattaatgcatagtatgttttcatag...

Basic information

species Glycine max
transcript GLYMA08G26000.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G26000.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv18s0001g03830.t01 (Vitis vinifera), 5'ss of exon 3
ATCCTTGCAATTCCTGCCATTCCTTTAACCATGTCAGCTGGACTTCTATTTGGATCTGTTGTCGGCACTATCATAGTCTCTATCAGCGGAACAgtgagtcaatttggatca--tatagttgactgcattatctac---aaatatttttaattctattcatatttttaaggttaattaatgcatagtatgttttcatag---------------------------
|||||||||||||| |||||||| || |||||||||||||| || || ||||| ||| ||   ||||||||||| || || || || |||||||| |||   |||    ||  || | | ||     ||| | ||   || |  ||||  || | || ||  ||||||   | ||    ||| ||| | |  | | |                            
ATCCTTGCAATTCCAGCCATTCCATTGACCATGTCAGCTGGTCTGCTTTTTGGCTCTTTTACTGGCACTATCATTGTTTCGATTAGTGGAACAgtaagttgtttttctgcaattaaaatagaacaacttagcaaccttaagtgcttttctttttctttattgttttaaatgtgatgg--gcacagtttttactaaaaaatgtatattttttttaacccttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533380|gb|EH261513.1|EH261513
EST:     TTCTATTTGGATCTGTTGTCGGCACTATCATAGTCTCTATCAGCGGAACA                         GTGGCAGCCAGTGTTGCTTTTCTAATTGCAAGATATTTTGCTCGTGAGCGA
genomic: TTCTATTTGGATCTGTTGTCGGCACTATCATAGTCTCTATCAGCGGAACAgtgagtcaat ... ggcattgtagGTGGCAGCCAGTGTTGCTTTTCTAATTGCAAGATATTTTGCTCGTGAGCGA
EST: gi|209699648|gb|BW655727.1|BW655727
EST:     TTCTATTTGGATCTGTTGTCGGCACTATCATAGTCTCTATCAGCGGAACA                         GTGGCAGCCAGTGTTGCTTTTCTAATTGCAAGATATTTTGCTCGTGAGCGA
genomic: TTCTATTTGGATCTGTTGTCGGCACTATCATAGTCTCTATCAGCGGAACAgtgagtcaat ... ggcattgtagGTGGCAGCCAGTGTTGCTTTTCTAATTGCAAGATATTTTGCTCGTGAGCGA
EST: gi|120530346|gb|EH258479.1|EH258479
EST:     TTCTATTTGGATCTGTTGTCGGCACTATCATAGTCTCTATCAGCGGAACA                         GTGGCAGCCAGTGTTGCTTTTCTAATTGCAAGATATTTTGCTCGTGAGCGA
genomic: TTCTATTTGGATCTGTTGTCGGCACTATCATAGTCTCTATCAGCGGAACAgtgagtcaat ... ggcattgtagGTGGCAGCCAGTGTTGCTTTTCTAATTGCAAGATATTTTGCTCGTGAGCGA
EST: gi|120530968|gb|EH259101.1|EH259101
EST:     TCTATTTGGATCTGTTGTCGGCACTATCATAGTCTCTAATCAGCGGAACA                         GTGGCAGCCAGTGTTGCTTTTCTAAATTGCAAGATATTTTGCTCGTGAGCG
genomic: TCTATTTGGATCTGTTGTCGGCACTATCATAGTCTCTA-TCAGCGGAACAgtgagtcaat ... ggcattgtagGTGGCAGCCAGTGTTGCTTTTCTAA-TTGCAAGATATTTTGCTCGTGAGCG
EST: gi|120531813|gb|EH259946.1|EH259946
EST:     TTCTATTTGGATCTGTTGTCGGCACTATCATAGTCTCTATCAGCGGAACA                         GTGGCAGCCAGTGTTGCTTTTCTAATTGCAAGATATTTTGCTCGTGAGCGA
genomic: TTCTATTTGGATCTGTTGTCGGCACTATCATAGTCTCTATCAGCGGAACAgtgagtcaat ... ggcattgtagGTGGCAGCCAGTGTTGCTTTTCTAATTGCAAGATATTTTGCTCGTGAGCGA
EST: gi|51337968|gb|CO981834.1|CO981834
EST:     TTCTATTTGGATCTGTTGTCGGCACTATCATAGTCTCTATCAGCGGAACA                         GTGGCAGCCAGTGTTGCTTTTCTAATTGCAAGATATTTTGCTCGTGAGCGA
genomic: TTCTATTTGGATCTGTTGTCGGCACTATCATAGTCTCTATCAGCGGAACAgtgagtcaat ... ggcattgtagGTGGCAGCCAGTGTTGCTTTTCTAATTGCAAGATATTTTGCTCGTGAGCGA