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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTACTGATGAAGAGTCTTGCAAGAAACCAAGGGAGGAAACCATCAAAGCAAAAATTTCAAGAGTTTATGTCAGGACTGAATCATCTGATACTAGCCTTgtgagtctctttactagtactctcctttggttctttgacatagcatagactatttaaatagggtaagtgtttgacagatttttcattgtatgtggttttag

Basic information

species Glycine max
transcript GLYMA08G23380.3
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209706888|gb|BW661498.1|BW661498
EST:     CAAAAATTTCAAGAGTTTATGTCAGGACTGAATCATCTGATACTAGCCTT                         ATTGTGAAAGATGGATACCAATGGAGGAAATATGGACAAAAGGTGACCAGA
genomic: CAAAAATTTCAAGAGTTTATGTCAGGACTGAATCATCTGATACTAGCCTTgtgagtctct ... gtggttttagATTGTGAAAGATGGATACCAATGGAGGAAATATGGACAAAAGGTGACCAGA
EST: gi|254342046|gb|GR853183.1|GR853183
EST:     CAAAAATTTCAAGAGTTTATGTCAGGACTGAATCATCTGATACTAGCCTT                         ATTGTGAAAGATGGATACCAATGGAGGAAATATGGACAAAAGGTGACCAGA
genomic: CAAAAATTTCAAGAGTTTATGTCAGGACTGAATCATCTGATACTAGCCTTgtgagtctct ... gtggttttagATTGTGAAAGATGGATACCAATGGAGGAAATATGGACAAAAGGTGACCAGA
EST: gi|37995904|gb|CF807493.1|CF807493
EST:     CAAAAATTTCAAGAGTTTATGTCAGGACTGAATCATCTGATACTAGCCTT                         ATTGTGAAAGATGGATACCAATGGAGGANATATGGACAAAAGGTGACCAGA
genomic: CAAAAATTTCAAGAGTTTATGTCAGGACTGAATCATCTGATACTAGCCTTgtgagtctct ... gtggttttagATTGTGAAAGATGGATACCAATGGAGGAAATATGGACAAAAGGTGACCAGA
EST: gi|213594145|gb|DB963770.1|DB963770
EST:     CAAAAATTTCAAGAGTTTATGTCAGGACTGAATCATCTGATACTAGCCTT                         ATTGTGAAAGATGGATACCAATGGAGGGAATATGGACNAAAGGTGACCAGA
genomic: CAAAAATTTCAAGAGTTTATGTCAGGACTGAATCATCTGATACTAGCCTTgtgagtctct ... gtggttttagATTGTGAAAGATGGATACCAATGGAGGAAATATGGACAAAAGGTGACCAGA
EST: gi|33389342|gb|CA852549.1|CA852549
EST:     CAAAAATTTCAAGAGTTTATGTCAGGACTGAATCATCTGATACTAGCCTT                         ATTGTGAAAGATGGATACCAATGGAGGAAATATGGACAAAAGGTGACCAGA
genomic: CAAAAATTTCAAGAGTTTATGTCAGGACTGAATCATCTGATACTAGCCTTgtgagtctct ... gtggttttagATTGTGAAAGATGGATACCAATGGAGGAAATATGGACAAAAGGTGACCAGA
EST: gi|192300003|gb|FG991835.1|FG991835
EST:     CAAAAATTTCAAGAGTTTATGTCAGGACTGAATCATCTGATACTAGCCTT                         ATTGTGAAAGATGGATACCAATGGAGGAAGTATGGACAAAAGGTGACCAGA
genomic: CAAAAATTTCAAGAGTTTATGTCAGGACTGAATCATCTGATACTAGCCTTgtgagtctct ... gtggttttagATTGTGAAAGATGGATACCAATGGAGGAAATATGGACAAAAGGTGACCAGA
EST: gi|254318274|gb|GR832442.1|GR832442
EST:     CAAAAATTTCAAGAGTTTATGTCACGACTGAATCATCTGATACTAGCCTT                         ATTGTGAAAGATGGATACCAATGGAGGAAATATGGACAAAAGGTGACCAGA
genomic: CAAAAATTTCAAGAGTTTATGTCAGGACTGAATCATCTGATACTAGCCTTgtgagtctct ... gtggttttagATTGTGAAAGATGGATACCAATGGAGGAAATATGGACAAAAGGTGACCAGA
EST: gi|11411497|gb|BF423508.1|BF423508
EST:     CAGAGATTTCAAGAGTTTATGTCAGGACTGAATCATCTGATACTAGCCTT                         ATTGTGATAGATGGATACCAATGGAGGAAATATGGACAAAAGGTGACCAGA
genomic: CAAAAATTTCAAGAGTTTATGTCAGGACTGAATCATCTGATACTAGCCTTgtgagtctct ... gtggttttagATTGTGAAAGATGGATACCAATGGAGGAAATATGGACAAAAGGTGACCAGA