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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAACAAGCTGGAAAAACTTATTTGCATACATTGGGCCTGGATTTCTTGTTTCCATTGCATATATCGACCCAGGAAACTgtaagatcatttattcatcactttattctgaaataaaaggaaatatattcctgacatagatatgcttatcgtatttttcacaatgacttgcag

Basic information

species Glycine max
transcript GLYMA08G23320.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G23320.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os06g46310.1 (Oryza sativa), 5'ss of exon 3
AGAACAAGCTGGAAAAACTTATTTGCATACATTGGGCCTGGATTTCTTGTTTCCATTGCATATATCGACCCAGGAAACTgtaagatcattt-attcatcactttattctgaaataaaaggaaatatattcctgacatagatatgcttatcgtatttttcacaatgacttgcag
| ||  || ||||| ||| ||||| ||||||| ||||| ||||||||||| || ||||| ||||| || || ||||| ||||||||   |  |||  |   |   | ||   | |  || |   | | |  | |     | | |  | ||  || || ||             
AAAAATAGTTGGAAGAACCTATTTTCATACATAGGGCCCGGATTTCTTGTCTCTATTGCGTATATTGATCCTGGAAATTgtaagatagctggatttgttgttcactcctattaaatgagtattcacagtgatcatgaccaaaagaatctctcatcttgcag------------

upper sequence: GLYMA08G23320.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G069198_T04 (Zea mays), 5'ss of exon 3
AGAACAAGCTGGAAAAACTTATTTGCATACATTGGGCCTGGATTTCTTGTTTCCATTGCATATATCGACCCAGGAAACTgtaagatcatttattcatcactttattctgaaataaaaggaaatatattcctgacataga-----tatgcttatcgtatttttcacaatgacttgcag
| ||  || ||||| ||||||||  ||||||| |||||||||||||| || || ||||||||||| || || |||||||||||||| |     |  |||||||  |  ||     |  ||  ||| | |||  |||  |     ||| |||  |  ||||||     || |||||||
AAAAACAGTTGGAAGAACTTATTCTCATACATAGGGCCTGGATTTCTCGTCTCAATTGCATATATTGATCCTGGAAACTgtaagattaacggat--tcacttttcttcgattctcattgag-tatttcccttccatctattgtgtattcttcacaaattttttggtgtgtcttgcag

upper sequence: GLYMA08G23320.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G80830.1 (Arabidopsis thaliana), 5'ss of exon 2
AGAACAAGCTGGAAAAACTTATTTGCATACATTGGGCCTGGATTTCTTGTTTCCATTGCATATATCGACCCAGGAAACTgtaagatcatttattcatcactttattctgaaataaaaggaaatatattcctgacatagatatgcttatcgtatttttcacaatgacttgcag
|  |  |||||||| || || ||||| ||| | || ||||| ||||||||||| || |||||||| || || ||||||||||||  |||| | || || |||| || | ||  |   | ||| ||     ||| || |||    |  |  |  || |  |  ||   |||||
AAGAAGAGCTGGAAGAATTTCTTTGCTTACTTAGGCCCTGGTTTTCTTGTTTCAATCGCATATATTGATCCTGGAAACTgtaagcacatt-actc-tctctttttttttaataatctgtaaagat----ttgagat-gattcattcttgtttcttcttcctgtgttctgcag

upper sequence: GLYMA08G23320.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G15960.1 (Arabidopsis thaliana), 5'ss of exon 2
AGAACAAGCTGGAAAAACTTATTTGCATACATTGGGCCTGGATTTCTTGTTTCCATTGCATATATCGACCCAGGAAACTgtaagatcatttattcatcactttattctgaaataaaag-gaaatatattc-ctgacatagatatgcttatcgtatttttcacaatgact-tgcag
| ||  |||||||||||||| ||  ||||| | || |||||||||||||| || ||||| || || || || ||||||||||||||          || |||| |    |||| |||| | || |  | | | |||| | | | |||   | | ||| |     |   | | |||
AAAAAGAGCTGGAAAAACTTCTTCTCATACTTAGGCCCTGGATTTCTTGTCTCAATTGCTTACATTGATCCTGGAAACTgtaagat----------tctctttgtaaataaatgaaagtgtaacacttacgcagacagacacaagctatgcatttttgttgttgttgttgtacag

upper sequence: GLYMA08G23320.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv09s0070g00210.t01 (Vitis vinifera), 5'ss of exon 3
AGAACAAGCTGGAAAAACTTATTTGCATACATTGGGCCTGGATTTCTTGTTTCCATTGCATATATCGACCCAGGAAACTgtaagatcatttattcatcactttattctgaaataaaaggaaatatattcctgacatagatatgcttatcgtatttttcacaat-gacttgcag
|| | |||||||||||||||||||||||| || || ||||| |||||||| || ||||||||||| || || ||||| |||||||       ||| |   |   || |  | ||  |  ||||    | |  |  ||  |   || ||| ||| |||    || | |||||||
AGGAAAAGCTGGAAAAACTTATTTGCATATATGGGTCCTGGGTTTCTTGTGTCTATTGCATATATTGATCCTGGAAATTgtaagactgagacttcttagttcctttttttactactataaaatgctcttcctaatta--tgccctcatc-tatattttgtgatcgccttgcag