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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtcttattgccttttctatttaaattgtatttttttactaatgtataattttgctgtgtaagaggaaaactataagagtcacatagcattgattgt...

Basic information

species Glycine max
transcript GLYMA08G22410.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298190828|gb|HO032949.1|HO032949
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|192302311|gb|FG996649.1|FG996649
EST:     GAAGGAATATTCTTGAAATGGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|298175877|gb|HO015282.1|HO015282
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|6566901|gb|AW234533.1|AW234533
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTGCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|6724900|gb|AW309299.1|AW309299
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|10237010|gb|BE805898.1|BE805898
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|298163725|gb|HO012458.1|HO012458
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|192297284|gb|FG992393.1|FG992393
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|17518872|gb|BM187914.1|BM187914
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|15000343|gb|BI321157.1|BI321157
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|192325877|gb|FK016554.1|FK016554
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGACACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|298179041|gb|HO024776.1|HO024776
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|15813798|gb|BI786073.1|BI786073
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|14011794|gb|BG726716.1|BG726716
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|209715584|gb|BW674321.1|BW674321
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|192330663|gb|FK021968.1|FK021968
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|298198446|gb|HO039985.1|HO039985
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|16346699|gb|BI972294.1|BI972294
EST:     GAAGGAATATTCTTGAAATATACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGACAAATCTTACTATGATAAAATGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|10847095|gb|BF069862.1|BF069862
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|38192769|gb|CF921975.1|CF921975
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|192297285|gb|FG992394.1|FG992394
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|192310382|gb|FK002262.1|FK002262
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|208172653|gb|GD972882.1|GD972882
EST:     TCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: TCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|4290153|gb|AI438028.1|AI438028
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|11275029|gb|BF325353.1|BF325353
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|192302312|gb|FG996650.1|FG996650
EST:     GAAGGAATATTCTTGAAATGGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|207802763|gb|GD773976.1|GD773976
EST:     AGGAATATTCTTGAAATAGACCTATTCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: AGGAATATTCTTGAAATAGACC-A-TCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|15338027|gb|BI498683.1|BI498683
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|7590619|gb|AW706367.1|AW706367
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|4313609|gb|AI460728.1|AI460728
EST:     AAGGAATATTCTTGAAATAGACCATTCCC-AAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGT
genomic: AAGGAATATTCTTGAAATAGACCAT-CCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGT
EST: gi|209715583|gb|BW674320.1|BW674320
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|7924358|gb|AW830384.1|AW830384
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|192324441|gb|FK015792.1|FK015792
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|22540930|gb|BU090773.1|BU090773
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAATCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGTATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
EST: gi|298185232|gb|HO030445.1|HO030445
EST:     GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAG                         GAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC
genomic: GAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtctta ... tggatcatagGAAGCACCTGCTGTTGTCAAATCTTACTATGATAAAAGGATAGTCGGATGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAAGGAATATTCTTGAAATAGACCATCCCGAAGGTCCATTCGGCACGAAGgtcagtcttattgccttttctatttaaattgtatttttttactaatgtataattttgctgtgtaagaggaaaactataagagtcacatagcattgattgt

- AAGGAA