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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGGGCCCTTTATTACATACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATGgtaagtggagattatagttgtgttttatgttttggaaaagtaagacactgttgctcccagaaatgttacagaaactggatagagtttgaaaaatgatgtt...

Basic information

species Glycine max
transcript GLYMA08G21290.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26045900|gb|CA783324.1|CA783324
EST:     ACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATG                         CTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTG
genomic: ACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATGgtaagtggag ... attcttttagCTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTG
EST: gi|192334789|gb|FK025280.1|FK025280
EST:     ACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATG                         CTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTG
genomic: ACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATGgtaagtggag ... attcttttagCTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTG
EST: gi|151411678|gb|EV281489.1|EV281489
EST:     ACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATG                         CTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTG
genomic: ACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATGgtaagtggag ... attcttttagCTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTG
EST: gi|17964059|gb|BM270800.1|BM270800
EST:     ACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATG                         CTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTG
genomic: ACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATGgtaagtggag ... attcttttagCTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTG
EST: gi|192330593|gb|FK022262.1|FK022262
EST:     GCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATG                         CTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTG
genomic: GCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATGgtaagtggag ... attcttttagCTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTG
EST: gi|19346977|gb|BM891857.1|BM891857
EST:     ACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATG                         CTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTG
genomic: ACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATGgtaagtggag ... attcttttagCTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTG
EST: gi|298171957|gb|HO021549.1|HO021549
EST:     ACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATG                         CTGGGTCAGCTGA
genomic: ACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATGgtaagtggag ... attcttttagCTGGGTCAGCTGA
EST: gi|7042352|gb|AW472246.1|AW472246
EST:     ACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATG                         CTGGGTCAGCTGATTCTGANAATGAGACTGCATTGTTGGAATCAAAGACTG
genomic: ACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATGgtaagtggag ... attcttttagCTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTG
EST: gi|298167187|gb|HO010626.1|HO010626
EST:     ACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATG                         CTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAA
genomic: ACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATGgtaagtggag ... attcttttagCTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAA
EST: gi|192334790|gb|FK025281.1|FK025281
EST:     ACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATG                         CTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTG
genomic: ACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATGgtaagtggag ... attcttttagCTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTG
EST: gi|192307836|gb|FG999315.1|FG999315
EST:     ACAAAAGGCTTTTACTACAGCTGCCTCAA-GTTGGAGAAGATTGGATATG                         CTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTG
genomic: ACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATGgtaagtggag ... attcttttagCTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTG
EST: gi|19346603|gb|BM891483.1|BM891483
EST:     ACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATG                         CTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTG
genomic: ACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATGgtaagtggag ... attcttttagCTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTG
EST: gi|192307837|gb|FG999316.1|FG999316
EST:     GGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATG                         CTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTG
genomic: GGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATGgtaagtggag ... attcttttagCTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTG
EST: gi|192330592|gb|FK022261.1|FK022261
EST:     ACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATG                         CTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTG
genomic: ACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATGgtaagtggag ... attcttttagCTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTGGAATCAAAGACTG
EST: gi|298188965|gb|HO035658.1|HO035658
EST:     ACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATG                         CTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTG
genomic: ACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATGgtaagtggag ... attcttttagCTGGGTCAGCTGATTCTGAAAATGAGACTGCATTGTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAAGGGCCCTTTATTACATACAAAAGGCTTTTACTACAGCTGCCTCAAAGTTGGAGAAGATTGGATATGgtaagtggagattatagttgtgttttatgttttggaaaagtaagacactgttgctcccagaaatgttacagaaactggatagagtttgaaaaatgatgtt

- - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - -  TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA