1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ACTACAAACAAGAACAGGATATGGAAATTGAAGCATTAGAAGCTATACTTATGGATGAGTTCAAAGgtttgttttttttataccatttaaaatctctctctctctctctctctatatatatataatcccaatttacttgtcatttgtttttccactgagaagataaaagggcctgattttctgtttgatattccatgctag
species | Glycine max |
transcript | GLYMA08G20940.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGATATGGAAATTGAAGCATTAGAAGCTATACTTATGGATGAGTTCAAAG AAATACATTCTGGTGAAAGCGGCCTAAGTACTTCCAATCGATGCTTCCAAAEST: gi|151399149|gb|EV269020.1|EV269020
genomic: GGATATGGAAATTGAAGCATTAGAAGCTATACTTATGGATGAGTTCAAAGgtttgttttt ... tccatgctagAAATACATTCTGGTGAAAGCGGCCTAAGTACTTCCAATCGATGCTTCCAAA
EST: ATACTTATGGATGAGTTCAAAG AAATACATTCTGGTGAAAGCGGCCTAAGTACTTCCAATCGATGCTTCCAAAEST: gi|151410528|gb|EV280343.1|EV280343
genomic: ATACTTATGGATGAGTTCAAAGgtttgttttt ... tccatgctagAAATACATTCTGGTGAAAGCGGCCTAAGTACTTCCAATCGATGCTTCCAAA
EST: GGATATGGAAATTGAAGCATTAGAAGCTATACTTATGGATGAGTTCAAAG AAATACATTCTGGTGAAAGCGGCCTAAGTACTTCCAATCGATGCTTCCAAAEST: gi|151408650|gb|EV278458.1|EV278458
genomic: GGATATGGAAATTGAAGCATTAGAAGCTATACTTATGGATGAGTTCAAAGgtttgttttt ... tccatgctagAAATACATTCTGGTGAAAGCGGCCTAAGTACTTCCAATCGATGCTTCCAAA
EST: GGATATGGAAATTGAAGCATTAGAAGCTATACTTATGGATGAGTTCAAAG AAATACATTCTGGTGAAAGCGGTCTAAGTACTTCCAATCGATGCTTCCAAA
genomic: GGATATGGAAATTGAAGCATTAGAAGCTATACTTATGGATGAGTTCAAAGgtttgttttt ... tccatgctagAAATACATTCTGGTGAAAGCGGCCTAAGTACTTCCAATCGATGCTTCCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTACAAACAAGAACAGGATATGGAAATTGAAGCATTAGAAGCTATACTTATGGATGAGTTCAAAGgtttgttttttttataccatttaaaatctctctctctctctctctctatatatatataatcccaatttacttgtcatttgtttttccactgagaagataaaagggcctgattttctgtttgatattccatgctag
- - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - AGAAGC