1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TTGAAGCTACGCTAAAAAGGGATCCTCATGAGGTTGAATTCATTCAGGCAGTCCAAGAAGCAGTTCAAGCCCTTGAAAGAGTCATAGCAAAAAATTCTCGgtgtgttttattcaaatggctatagttatatatttatttatccactgataacaaagccaatgctttagtatttgaagcatctgattctcatcaatattctcatgtttcag
species | Glycine max |
transcript | GLYMA08G20930.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTCCAAGAAGCAGTTCAAGCCCTTGAAAGAGTCATAGCAAAAAATTCTCG TTATATTAACATCATGGAGCGCTTATEST: gi|207839597|gb|GD811764.1|GD811764
genomic: GTCCAAGAAGCAGTTCAAGCCCTTGAAAGAGTCATAGCAAAAAATTCTCGgtgtgtttta ... catgtttcagTTATATTAACATCATGGAGCGCTTAT
EST: GTCCAAGAAGCAGTTCAAGCCCTTGAAAGAGTCATAGCAAAAAATTCTCG TTATATTAACATCATGGAGCGCTTATTGGAACCTGAACGAATGATTGTTTTEST: gi|208167267|gb|GD963057.1|GD963057
genomic: GTCCAAGAAGCAGTTCAAGCCCTTGAAAGAGTCATAGCAAAAAATTCTCGgtgtgtttta ... catgtttcagTTATATTAACATCATGGAGCGCTTATTGGAACCTGAACGAATGATTGTTTT
EST: GTCCAAGAAGCAGTTCAAGCCCTTGAAAGAGTCATAGCAAAAAATTCTCG TTATATTAACATCATGGAGCGCTTATTGGAACCTGAACGAATGATTGTTTTEST: gi|208332237|gb|GE127732.1|GE127732
genomic: GTCCAAGAAGCAGTTCAAGCCCTTGAAAGAGTCATAGCAAAAAATTCTCGgtgtgtttta ... catgtttcagTTATATTAACATCATGGAGCGCTTATTGGAACCTGAACGAATGATTGTTTT
EST: TCCAAGAAGCAGTTCAAGCCCTTGAAAGAGTCATAGACAAAAAATTCTCG TTATATTAACATCATGGAGCGCTTATTGGAACCTGAACGAATGATTGTTTT
genomic: TCCAAGAAGCAGTTCAAGCCCTTGAAAGAGTCATAG-CAAAAAATTCTCGgtgtgtttta ... catgtttcagTTATATTAACATCATGGAGCGCTTATTGGAACCTGAACGAATGATTGTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGAAGCTACGCTAAAAAGGGATCCTCATGAGGTTGAATTCATTCAGGCAGTCCAAGAAGCAGTTCAAGCCCTTGAAAGAGTCATAGCAAAAAATTCTCGgtgtgttttattcaaatggctatagttatatatttatttatccactgataacaaagccaatgctttagtatttgaagcatctgattctcatcaatattctcatgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC