1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GATGATGCTGATTGGTCAACAGTAGGGGTGAAAGAGgttgagcggtgctagaatgtgtttttcattaccattcgactatattccatatgccttttcatttaattgatctacataatcttcttttccag
species | Glycine max |
transcript | GLYMA08G20900.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GATGATGCTGATTGGTCAACAGTAGGGGTGAAAGAG GGTCAAAAGCTAATGATGATGGGTACAGCTGATGAAGTTGTGAAGACTCCTEST: gi|193320190|gb|FK284367.1|FK284367
genomic: GATGATGCTGATTGGTCAACAGTAGGGGTGAAAGAGgttgagcggt ... tcttttccagGGTCAAAAGCTAATGATGATGGGTACAGCTGATGAAGTTGTGAAGACTCCT
EST: GATGATGCTGATTGGTCAACAGTAGGGGTGAAAGAG GGTCAAAAGCTAATGATGATGGGTACAGCTGATGAAGTTGTAAAGACTCCTEST: gi|207817575|gb|GD790992.1|GD790992
genomic: GATGATGCTGATTGGTCAACAGTAGGGGTGAAAGAGgttgagcggt ... tcttttccagGGTCAAAAGCTAATGATGATGGGTACAGCTGATGAAGTTGTGAAGACTCCT
EST: GATGATGCTGATTGGTCAACAGTAGGGGTGAAAGAG GGTCAAAAGCTAATGATGATGGGTACAGCTGATGAAGTTGT-AAGGACTCCEST: gi|209716351|gb|BW650750.1|BW650750
genomic: GATGATGCTGATTGGTCAACAGTAGGGGTGAAAGAGgttgagcggt ... tcttttccagGGTCAAAAGCTAATGATGATGGGTACAGCTGATGAAGTTGTGAAG-ACTCC
EST: GATGATGCTGATTGGTCAACAGTAGGGGTGAAAGAG GGTCAAAAGCTAATGATGATGGGTACAGCTGATGAAGTTGTGAAGACTCCT
genomic: GATGATGCTGATTGGTCAACAGTAGGGGTGAAAGAGgttgagcggt ... tcttttccagGGTCAAAAGCTAATGATGATGGGTACAGCTGATGAAGTTGTGAAGACTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGATGCTGATTGGTCAACAGTAGGGGTGAAAGAGgttgagcggtgctagaatgtgtttttcattaccattcgactatattccatatgccttttcatttaattgatctacataatcttcttttccag
- - ATGCTG
- - - GCTGAT