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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGGCGTGATCTGATAGGAATTGCAGAAACAGGATCAGGGAAGACACTTGCTTACTTGTTGCCTGCCATTGTGCATGTTAATGCTCAGCCAATACTAAgtgagtatataaggaaacaactgagatgattagatttcacattgcatgtaagggtgccttttctgactatgctacctttgttttgccgtccattcgttttcaatattttcag

Basic information

species Glycine max
transcript GLYMA08G20670.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20670.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g10050.1 (Oryza sativa), 5'ss of exon 3
AAGGGGCGTGATCTGATAGGAATTGCAGAAACAGGATCAGGGAAGACACTTGCTTACTTGTTGCCTGCCATTGTGCATGTTAATGCTCAGCCAATACTAAgtgagtata--taaggaaacaactgagatgattagatttcacattgcatgtaagggtgccttttctgactatgctacctttgttttgccgtccattcgttttcaatattttcag
| ||| |||||||| || || ||||| ||||||||||||||||| |||||||||||| | || ||||||||||| ||||||||||||||||| || ||| ||| | |    |    |     || |   ||||   ||      | ||| |  ||    ||||| ||   || ||||     ||||    ||| |  ||| | ||         
AGGGGACGTGATCTTATTGGCATTGCTGAAACAGGATCAGGGAAAACACTTGCTTACCTTTTACCTGCCATTGTTCATGTTAATGCTCAGCCGATTCTAGgtgcgaaatgttgcttatgtttcttaaccgatt---ttcttggatacat-tctggacttcttttgtggtaat-ctactaacatttt----tccgtgtgttattaaag-------

upper sequence: GLYMA08G20670.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G143246_T01 (Zea mays), 5'ss of exon 3
AAGGGGCGTGATCTGATAGGAATTGCAGAAACAGGATCAGGGAAGACACTTGCTTACTTGTTGCCTGCCATTGTGCATGTTAATGCTCAGCCAATACTAAgtgagtatataaggaaacaactgagatgattagatttcacattgcatgtaagggtgccttttctgactatgctacctttgttttgccgtccattcgttttcaatattttcag
|  || || || || || || |||||||| |||||||||||||| || ||||||||| | || ||||||||||| ||||| ||||| ||||| || ||  ||||| |  |          |    ||| ||    ||| ||       |  |||  |     || |  || ||         || |  |    | ||| |  |         
AGAGGCCGCGACCTTATTGGCATTGCAGAGACAGGATCAGGGAAAACTCTTGCTTACCTTTTACCTGCCATTGTTCATGTGAATGCGCAGCCTATTCTTTgtgagaacttg------tttccccaatgcttttccttctcaaccatcttttgggaactccagctaaaaattctgaacac---ttacaattttgttgttgttgaag-------

upper sequence: GLYMA08G20670.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv09s0002g02100.t01 (Vitis vinifera), 5'ss of exon 3
AAGGGGCGTGATCTGATAGGAATTGCAGAAACAGGATCAGGGAAGACACTTGCTTACTTGTTGCCTGCCATTGTGCATGTTAATGCTCAGCCAATACTAAgtg--agtatataaggaaacaactgagatgattagatttcacattgcatgtaagggtgccttt-tctgactatgc-tacctttgttttgccgtccattcgttttcaatattttcag---------------------
||||| |||||| | || || ||||| |||||||||||||| ||||||||||| ||  | |||||||| ||  | ||||| ||||||||||||||  || ||   ||| | |    ||     |||  |   ||  ||     ||  || ||    |   | | |||   |||   ||  | ||      | |   ||  |  | |  | |||  |                     
AAGGGCCGTGATGTCATTGGTATTGCTGAAACAGGATCAGGAAAGACACTTGCATATCTATTGCCTGCAATCATCCATGTAAATGCTCAGCCAATTTTAGgtataagtgtctttctaattcgttgatgtcgctaatttctgatttctatctatctatctatctatctatatatatatatatatgcacacacatttttttctagttacaagttttggtctttctctgtattttctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151407052|gb|EV276867.1|EV276867
EST:     TGCTTACTTGTTGCCTGCCATTGTGCATGTTAATGCTCAGCCAATACTAA                         ATCCCTGGAGATGGACCAATTGTGCTAGTTTTGGCTCCAACTCGTGAACTT
genomic: TGCTTACTTGTTGCCTGCCATTGTGCATGTTAATGCTCAGCCAATACTAAgtgagtatat ... atattttcagATCC-TGGAGATGGACCAATTGTGCTAGTTTTGGCTCCAACTCGTGAACTT
EST: gi|208245662|gb|GE047026.1|GE047026
EST:     TGTTAATGCTCAGCCAATACTAA                         ATCCTGGAGATGGACCAATTGTGCTAGTTTTGGCTCCAACTCGTGAACTTG
genomic: TGTTAATGCTCAGCCAATACTAAgtgagtatat ... atattttcagATCCTGGAGATGGACCAATTGTGCTAGTTTTGGCTCCAACTCGTGAACTTG
EST: gi|7925520|gb|AW831546.1|AW831546
EST:     TGCTTACTTGTTGCCTGCCATTGTGCATGTTAATGCTCAGCCAATACTAA                         ATCCTGGAGATGGACCAATTGTGCTAGTNTTGGCTCCAACTCGTGAACTTG
genomic: TGCTTACTTGTTGCCTGCCATTGTGCATGTTAATGCTCAGCCAATACTAAgtgagtatat ... atattttcagATCCTGGAGATGGACCAATTGTGCTAGTTTTGGCTCCAACTCGTGAACTTG
EST: gi|209700616|gb|BW670334.1|BW670334
EST:     TGCTTACTTGTTGCCTGCCATTGTGCATGTTAATGCTCAGCCAATACTAA                         ATCCTGGAGATGGACCAATTGTGCTAGTTTTGGCTCCAACTCGTGAACTTG
genomic: TGCTTACTTGTTGCCTGCCATTGTGCATGTTAATGCTCAGCCAATACTAAgtgagtatat ... atattttcagATCCTGGAGATGGACCAATTGTGCTAGTTTTGGCTCCAACTCGTGAACTTG
EST: gi|213595546|gb|DB968510.1|DB968510
EST:     TGCTTACTTGTTGCCTGCCATTGTGCATGTTAATGCTCAGCCAATACTAA                         ATCCTGGAGATGGACCAATTG
genomic: TGCTTACTTGTTGCCTGCCATTGTGCATGTTAATGCTCAGCCAATACTAAgtgagtatat ... atattttcagATCCTGGAGATGGACCAATTG
EST: gi|151397571|gb|EV267444.1|EV267444
EST:     TGCTTACTTGTTGCCTGCCATTGTGCATGTTAATGCTCAGCCAATACTAA                         ATCCTGGAGATGGACCAATTGTGCTAGTTTTGGCTCCAACTCGTGAACTTG
genomic: TGCTTACTTGTTGCCTGCCATTGTGCATGTTAATGCTCAGCCAATACTAAgtgagtatat ... atattttcagATCCTGGAGATGGACCAATTGTGCTAGTTTTGGCTCCAACTCGTGAACTTG
EST: gi|9986238|gb|BE660346.1|BE660346
EST:     TGCTTACTTGTTGCCTGCCATTGTGCATGTTAATGCTCAGCCAATACTAA                         ATCCTGGAGATGG-CCAATTGTGCTAGTTTTGGCTTCCAACTCGTGAACTT
genomic: TGCTTACTTGTTGCCTGCCATTGTGCATGTTAATGCTCAGCCAATACTAAgtgagtatat ... atattttcagATCCTGGAGATGGACCAATTGTGCTAGTTTTGGCT-CCAACTCGTGAACTT
EST: gi|298192717|gb|HO033151.1|HO033151
EST:     TGCTTACTTGTTGCCTGCCATTGTGCATGTTAATGCTCAGCCAATATTAA                         ATCCTGGAGATGGACCA
genomic: TGCTTACTTGTTGCCTGCCATTGTGCATGTTAATGCTCAGCCAATACTAAgtgagtatat ... atattttcagATCCTGGAGATGGACCA