1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGAAGGAACAGTCATGTACTGTTGTTTGTCATGAAACATTGGATGCTGAATCTGCAAAGAGTTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACATgtaagtggtaaatgtattggagctagtgcttagttatgtagtataggtgtatttaattagtttgctgagattcattggcctgttgggtgcttgtctataggtttctgctttgaatttcccttgacccttgagttgaagctctgaattgaacatgcag
species | Glycine max |
transcript | GLYMA08G20640.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAAGAAAAAATTGATGATGAATATCGAGTGAACAT GATTTTGGATAAACCCTTCCAGTTGCTGTTCGTAGACAAAGGAGGGATGGAEST: gi|213608666|gb|DB968953.1|DB968953
genomic: AAAGAAAAAATTGATGATGAATATCGAGTGAACATgtaagtggta ... gaacatgcagGATTTTGGAT-AA-CCTTCCAGTTGCTGTTCGTAGACAAAGGAGGGATGGA
EST: TCTGCAAAGAGTTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACAT GATTTTGGATAACCTTCCAGTTGCTGTTCGTAGACAAAGGAGGGATGGAGGEST: gi|298184452|gb|HO029665.1|HO029665
genomic: TCTGCAAAGAGTTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACATgtaagtggta ... gaacatgcagGATTTTGGATAACCTTCCAGTTGCTGTTCGTAGACAAAGGAGGGATGGAGG
EST: TCTGCAAAGAGTTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACAT GATTTTGGATAACCTTCCAGTTGCTGTTCGTAGACAAAGGAGGGATGGAGGEST: gi|254334786|gb|GR844571.1|GR844571
genomic: TCTGCAAAGAGTTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACATgtaagtggta ... gaacatgcagGATTTTGGATAACCTTCCAGTTGCTGTTCGTAGACAAAGGAGGGATGGAGG
EST: TCTGCAAAGAGTTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACAT GATTTTGGATAACCTTCCAGTTGCTGTTCGTAGACAAAGGAGGGATGGAGGEST: gi|213617175|gb|DB971294.1|DB971294
genomic: TCTGCAAAGAGTTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACATgtaagtggta ... gaacatgcagGATTTTGGATAACCTTCCAGTTGCTGTTCGTAGACAAAGGAGGGATGGAGG
EST: TCTGCAAAGAGTTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACAT GATTTTGGATAACCTTCCAGTTGCTGTTCGTAGACAAAGGAGGGATGGAGGEST: gi|193318888|gb|FK283400.1|FK283400
genomic: TCTGCAAAGAGTTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACATgtaagtggta ... gaacatgcagGATTTTGGATAACCTTCCAGTTGCTGTTCGTAGACAAAGGAGGGATGGAGG
EST: CTGCAAAGAGTTTTAA-GAAAAA-TTGATGATTGAATATCGAGTGAACAT GATTTTGGATAACCTTCCAGTTGCTGTTCGTAGACAAAGGAGGGATGGAGGEST: gi|151397256|gb|EV267129.1|EV267129
genomic: CTGCAAAGAGTTTTAAAGAAAAAATTGATGAT-GAATATCGAGTGAACATgtaagtggta ... gaacatgcagGATTTTGGATAACCTTCCAGTTGCTGTTCGTAGACAAAGGAGGGATGGAGG
EST: TCTGCAAAGAGTTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACAT GATTTTGGATAACCTTCCAGTTGCTGTTCGTAGACAAAGGAGGGATGGAGG
genomic: TCTGCAAAGAGTTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACATgtaagtggta ... gaacatgcagGATTTTGGATAACCTTCCAGTTGCTGTTCGTAGACAAAGGAGGGATGGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGGAACAGTCATGTACTGTTGTTTGTCATGAAACATTGGATGCTGAATCTGCAAAGAGTTTTAAAGAAAAAATTGATGATGAATATCGAGTGAACATgtaagtggtaaatgtattggagctagtgcttagttatgtagtataggtgtatttaattagtttgctgagattcattggcctgttgggtgcttgtctataggtttctgctttgaatttcccttgacccttgagttgaagctctgaattgaacatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA