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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGACCTGCATTTCTTTGTCACTGGTGGTGAAGATGAAAATGAGCTCATTCTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAGgtatttttggttgtatatcttgatttaaaacctgatgtgcctttactgatcatgctctgtgtgtttattgccttttatag

Basic information

species Glycine max
transcript GLYMA08G20370.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G20370.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g21250.1 (Oryza sativa), 5'ss of exon 4
AAGACCTGCATTTCTTTGTCACTGGTGGTGAAGATGAAAATGAGCTCATTCTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAGgtatttttggttgtatatcttgatttaaaacctgatgtgcctttactgatcatgct-ctgtgtgtttattgcct-tttatag--------
||||||| ||||| |||||||| | |||||| ||||| |||||||||||| |||||   || || || || |||| |||| | ||    ||| |  | ||||||| |   |  |  |   |     |  | ||  | |    ||| || |  |    |||| | ||||  | |   |||  |        
AAGACCTTCATTTTTTTGTCACCGCTGGTGATGATGAGAATGAGCTCATTATAGCAAATGTACTACAGGGCTTCTCTGATTCTGTTGGTCTTTTACTCAGgtattgtacttcttccagtattccacatgaacttgtattttgttaatgttggtaaggctgtttctttaaagtcagcttactgtgctttag

upper sequence: GLYMA08G20370.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os01g62150.1 (Oryza sativa), 5'ss of exon 3
AAGACCTGCATTTCTTTGTCACTGGTGGTGAAGATGAAAATGAGCTCATTCTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAGgt------atttttggttgtatatcttgatttaaaacctgatgtgcctttactgatcatgctctgtg-tgtttattgccttttatag-------------------
|||| || || || ||||| ||||| ||||| || || |||||||||||| ||||||| |||||||| || |||| ||| ||  |       ||  | ||||      ||||   ||    ||   |  | |      | |  | || |||   ||  |  || ||  ||| || |   ||| | |                    
AAGATCTACACTTTTTTGTAACTGGAGGTGATGAAGAGAATGAGCTCATTTTAGCATCTGTTCTTCAGGGCTTCTCTGAAGCTATTGATTACCTTCTCAGgtgtggacatttcctgtgccgtacactcctatcttttttaacat-ccattataaatgcttgtcagtactgtatactat-tttaacaactctctttcttgttttcag

upper sequence: GLYMA08G20370.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G431350_T01 (Zea mays), 5'ss of exon 3
AAGACCTGCATTTCTTTGTCACTGGTGGTGAAGATGAAAATGAGCTCATTCTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAGgtatttttggttgtat--atcttgat--ttaaaacc----tgatgtgcctttactgatcatgctctgtgtgtttattgccttttatag------------------------
|||||||||| || ||||| ||||| || ||||| || |||||||| ||| |||||||||||||||| || |||| |||||| |||   |  ||  | | ||  ||||   | |||  | ||| ||  ||  ||||    |  ||| |  ||||   |  |  | |   || | ||||  | | |  |                        
AAGACCTGCACTTTTTTGTTACTGGAGGAGAAGAAGAGAATGAGCTTATTTTAGCATCAGTTCTTCAGGGATTCTCTGATGCTGTCGAACGACTTCTCAAgttattttccctctattaaactttatctttgcaaccactgttttgttctgttacatgttgttgtgttaatgctgattgtatatgaatgtgtttccaatcttggtggtttcag

upper sequence: GLYMA08G20370.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM5G883149_T03 (Zea mays), 5'ss of exon 3
AAGACCTGCATTTCTTTGTCACTGGTGGTGAAGATGAAAATGAGCTCATTCTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTC-ACCCTTCTGTTGAGgtattt----ttggttgtatatcttgatttaaaacctgatgtgcct--ttactgatcatgctctgtgtgtttattgccttttatag------------------------
|||||||||| || ||||| ||||| || ||||| || |||||||| ||| |||||||||||||||| || |||| |||||| ||| | |    | |  || ||| |    |   ||| |  |  |  ||| || | |  | ||     ||||   | ||  | |   || | ||||  | | |  |                        
AAGACCTGCACTTTTTTGTTACTGGAGGAGAAGAGGAGAATGAGCTTATTTTAGCATCAGTTCTTCAGGGATTCTCTGATGCTGTCGAACGACTTCTCAAgttatcttccctctattgaagtttatcttttcaaccattgtttgttctgttacatgttattgtgttaatgctgattgtatatgaatgtgtttccaaccttggtggtttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31560978|gb|CD486816.1|CD486816
EST:     CTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAG                         GAGTAATGTTGACAAAAGAGAGGCACTTGAGAACTTAGATCTCATTCTCCT
genomic: CTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAGgtatttttgg ... ccttttatagGAGTAATGTTGACAAAAGAGAGGCACTTGAGAACTTAGATCTCATTCTCCT
EST: gi|21256834|gb|BQ453722.1|BQ453722
EST:     CTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAG                         GAGTAATGTTGACAAAAGAGAGGCACTTGAGAACTTAGATCTCATTCTCCT
genomic: CTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAGgtatttttgg ... ccttttatagGAGTAATGTTGACAAAAGAGAGGCACTTGAGAACTTAGATCTCATTCTCCT
EST: gi|19937410|gb|BQ081279.1|BQ081279
EST:     GTTTCTTTGATGCAGTCACCCTTCTGTTGAG                         GAGTAATGTTGACAAAAGAGAGGCACTTGAGAACTTAGATCTCATTCTCCT
genomic: GTTTCTTTGATGCAGTCACCCTTCTGTTGAGgtatttttgg ... ccttttatagGAGTAATGTTGACAAAAGAGAGGCACTTGAGAACTTAGATCTCATTCTCCT
EST: gi|7285995|gb|AW598482.1|AW598482
EST:     CTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAG                         GAGTAATGTTGACAAAAGAGAGGCACTTGAGAACTTAGATCTCATTCTCCT
genomic: CTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAGgtatttttgg ... ccttttatagGAGTAATGTTGACAAAAGAGAGGCACTTGAGAACTTAGATCTCATTCTCCT
EST: gi|31470945|gb|CD412973.1|CD412973
EST:     CTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAG                         GAGTAATGTTGACAAAAGAGAGGCACTTGAGAACTTAGATCTCATTCTCCT
genomic: CTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAGgtatttttgg ... ccttttatagGAGTAATGTTGACAAAAGAGAGGCACTTGAGAACTTAGATCTCATTCTCCT
EST: gi|8404161|gb|BE059795.1|BE059795
EST:     AAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAG                         GAGTAATGTTGACAAAAGAGAGGCACTTGAGAACTTAGATCTCATTCTCCT
genomic: AAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAGgtatttttgg ... ccttttatagGAGTAATGTTGACAAAAGAGAGGCACTTGAGAACTTAGATCTCATTCTCCT
EST: gi|31305637|gb|CD390840.1|CD390840
EST:     CTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAG                         GAGTAATGTTGACAAAAGAGAGGCACTTGAGAACTTAGATCTCATTCTCCT
genomic: CTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAGgtatttttgg ... ccttttatagGAGTAATGTTGACAAAAGAGAGGCACTTGAGAACTTAGATCTCATTCTCCT
EST: gi|7029699|gb|AW459482.1|AW459482
EST:     AGGTTTCTTTGATGCAGTCACCCTTCTGTTGAG                         GAGTAATGTTGACAAAAGAGAGGCACTTGAGAACTTAGATCTCATTCTCCT
genomic: AGGTTTCTTTGATGCAGTCACCCTTCTGTTGAGgtatttttgg ... ccttttatagGAGTAATGTTGACAAAAGAGAGGCACTTGAGAACTTAGATCTCATTCTCCT
EST: gi|193376778|gb|FK340973.1|FK340973
EST:     CTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAG                         GAGTAATGTTGACAAAAGAGAGGCACTTGAGAACTTAGATCTCATTCTCCT
genomic: CTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAGgtatttttgg ... ccttttatagGAGTAATGTTGACAAAAGAGAGGCACTTGAGAACTTAGATCTCATTCTCCT
EST: gi|151410805|gb|EV280620.1|EV280620
EST:     CTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAG                         GAGTAATGTTGACAAAAGAGAGGCACTTGAGAACTTAGATCTCATTCTCCT
genomic: CTAGCATCAGTTCTTCAAGGTTTCTTTGATGCAGTCACCCTTCTGTTGAGgtatttttgg ... ccttttatagGAGTAATGTTGACAAAAGAGAGGCACTTGAGAACTTAGATCTCATTCTCCT