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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTGCATTAAAAGGATACATGGTGATGAATCTGGGCAGAAACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtattattgtttggttagtaaataagcattgagtcatttggtttgcttgtgtattctcttataacatcataatcctgtaccgcag

Basic information

species Glycine max
transcript GLYMA08G19380.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19380.1 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os11g06340.1 (Oryza sativa), 5'ss of exon 3
GCGTGCATTAAAAGGATACATGGTGATGAATCTGGGCAGAAACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtat------------------tattgtttggttagtaaataagcattgagtcatttgg----tttgcttgtgtattctcttataacatcataatc-ctgtaccgcag------------
  |||| | || ||  |  |    |||||  ||||||| |||||||||||||| |||||||| || |||||||| || ||||||||||||||||||||                  ||| |  |   | | |   ||  | ||| | ||   |    | ||| | | ||  ||    ||| | |||| |  ||||   |               
AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTgtaagtatctgcatgtgtgtgtgcaatatcgcatatctggaaccaaacaaatgatttatggagaagctctgcatatataagctaggttaataacatattttctgtggggtgcatctgcaggtag

upper sequence: GLYMA08G19380.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G122039_T06 (Zea mays), 5'ss of exon 3
GCGTGCATTAAAAGGATACATGGTGATGAATCTGGGCAGAAACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtattattgtttggttagtaaataagcattgagtcatttggtttgcttgtgtattctcttataacatcataatcctgta-ccgcag
   ||| | || ||  |  |   ||||||  |||| || |||||||||||||| ||||| |||||||| ||||| || || |||||||||||||||| |  |     | | | |  | | | ||  ||||||  ||          |    |  ||    |    | | || | | ||||
AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactcgttcccagcttgcactttaccgttt-gtcatt--gtcaagccagagaagaaccaattttttatggaacatgcatctgcag

upper sequence: GLYMA08G19380.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G122039_T01 (Zea mays), 5'ss of exon 2
----------GCGTGCATTAAAAGGATACATGGTGATGAATCTGGGCAGAAACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtattattgtttggttagtaaataagcattgagtcatttggtttgcttgtgtattctcttataacatcataatcctgta-ccgcag
             ||| | || ||  |  |   ||||||  |||| || |||||||||||||| ||||| |||||||| ||||| || || |||||||||||||||| |  |     | | | |  | | | ||  ||||||  ||          |    |  ||    |    | | || | | ||||
CTGTTATCAGAAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactcgttcccagcttgcactttaccgttt-gtcatt--gtcaagccagagaagaaccaattttttatggaacatgcatctgcag

upper sequence: GLYMA08G19380.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G122039_T07 (Zea mays), 5'ss of exon 3
GCGTGCATTAAAAGGATACATGGTGATGAATCTGGGCAGAAACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtattattgtttggttagtaaataagcattgagtcatttggtttgcttgtg------tattctcttataacatcataatcctgtaccgcag
   ||| | || ||  |  |   ||||||  |||| || |||||||||||||| ||||| |||||||| ||||| || || |||||||||||||||| |  |     | | | |  | | | ||  |||||| |    ||  | |       | | | ||||   | |||    ||| |  | ||
AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagtactcgttcccagcttgcactttaccgttt-gtcatt-gtcaagccagagaagaaccaattttttatggaa-catgcatctgcag-gtag

upper sequence: GLYMA08G19380.1 (Glycine max), 5'ss of exon 3
lower sequence: AT2G01090.2 (Arabidopsis thaliana), 5'ss of exon 4
GCGTGCATTAAAAGGATACATGGTGATGAATCTGGGCAGAAACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtat-----tattgtttggtta-gtaaat---aagcattgagtcatttggtttgcttgtgtattctcttataacatcataatcctgtaccgcag----------------------------
               || || | |||||| ||||| || ||||| |||||||| |||||||||||||| |||  |||| ||||||||||||||||| |     |  |||||   |   || |    |||  | | |  | |    |  |      |    |||  |   | ||  | || | | |                               
---------------ATCCAAGATGATGAGTCTGGCCACAAACATTGCACTGGGCAATATTTTGATTACTGGCATTGTGTTGACAAATGTGTAAGTGTGTGAGTGCTGTTTTTCTgtatacacctaaagtttcgcgaaactaaaatgacaaagacagctacttggagtct-atttttctttccagggttatataaaatgatgtggatgcttaacat