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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCGTTGTTGGGAGGTAGCACAGAATGGAGTTAATGTTGCCACTGTTCCCAAGGCTTCTATAACGCACGATCATCCGgtaaactcttttattttactttcatttttatcaccacttcattactactatctatgtattatcaatgcatgcattttcatccgttactattctagtatat...

Basic information

species Glycine max
transcript GLYMA08G19260.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192332604|gb|FK025709.1|FK025709
EST:     GAGTTAATGTTGCCACTGTTCCCAAGGCTTCTATAACGCACGATCATCCG                         GTTTTGTGCTCTACATGGAAGGATGATGGCACAGCTGTCTTCTCTGGTGGA
genomic: GAGTTAATGTTGCCACTGTTCCCAAGGCTTCTATAACGCACGATCATCCGgtaaactctt ... ctttgcatagGTTTTGTGCTCTACATGGAAGGATGATGGCACAACTGTCTTCTCTGGTGGA
EST: gi|151407693|gb|EV277508.1|EV277508
EST:     GAGTTAATGTTGCCACTGTTCCCAAGGCCTCTATAACGCACGATCATCCG                         GTTTTGTGCTCTACATGGAAGGATGATGGCACAACTGTCTTCTCTGGTGGA
genomic: GAGTTAATGTTGCCACTGTTCCCAAGGCTTCTATAACGCACGATCATCCGgtaaactctt ... ctttgcatagGTTTTGTGCTCTACATGGAAGGATGATGGCACAACTGTCTTCTCTGGTGGA
EST: gi|151399353|gb|EV269224.1|EV269224
EST:     GAGTTAATGTTGCCACTGTTCCCAAGGCTTCTATAACGCACGATCATCCG                         GTTTTGTGCTCTACATGGAAGGATGATGGCACAACTGTCTTCTCTGGTGGA
genomic: GAGTTAATGTTGCCACTGTTCCCAAGGCTTCTATAACGCACGATCATCCGgtaaactctt ... ctttgcatagGTTTTGTGCTCTACATGGAAGGATGATGGCACAACTGTCTTCTCTGGTGGA