1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GATTCAAATTGAGCCTTTCAACCTAGAGAAAGAAAGGGAAGAAGGTTATTTTGATGCTGCAGGAAATTTTGTTGAATATATAAGAGAGAACGAGATTAAGgtgagggatttatattgtttttcattttttatttgtgactatttcatttaagttctattaataaattaaggagccttacag
species | Glycine max |
transcript | GLYMA08G19130.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGATGCTGCGGGAAATTTTGTTGAATATATAAGAGAGAACGAGATTAAG GATGCATGGCTTGATAATGTTGAAGTTGATCCAAAATATGCTGCATTAAGCEST: gi|193302348|gb|FK268737.1|FK268737
genomic: TTGATGCTGCAGGAAATTTTGTTGAATATATAAGAGAGAACGAGATTAAGgtgagggatt ... agccttacagGATGCATGGCTTGATAATGTTGAAGTTGATCCAAAATATGCTGCATTAAGC
EST: TTGATGCTGCAGGAAATTTTGTTGAATATGTAAGAGAGAATGAGATTAAG GATGCATGGCTTGATAATGTTGAAGTTGATCCAAAATATGCTGCATTAAGCEST: gi|24136249|gb|BU926759.1|BU926759
genomic: TTGATGCTGCAGGAAATTTTGTTGAATATATAAGAGAGAACGAGATTAAGgtgagggatt ... agccttacagGATGCATGGCTTGATAATGTTGAAGTTGATCCAAAATATGCTGCATTAAGC
EST: AGAGAACGAGATTAAG GATGCATGGCTTGATAATGTTGAAGTTGATCCAAAATATGCTGCATTAAGC
genomic: AGAGAACGAGATTAAGgtgagggatt ... agccttacagGATGCATGGCTTGATAATGTTGAAGTTGATCCAAAATATGCTGCATTAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTCAAATTGAGCCTTTCAACCTAGAGAAAGAAAGGGAAGAAGGTTATTTTGATGCTGCAGGAAATTTTGTTGAATATATAAGAGAGAACGAGATTAAGgtgagggatttatattgtttttcattttttatttgtgactatttcatttaagttctattaataaattaaggagccttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA