Sequence
atgc intronic sequence ATGC exonic sequenceGTTACTGAGGAGCGGCTTGCTGCCTTATTCAGCAGCTGTGGACAAgtaagttatgagccttgattgatagcttgattactctttcttagtttacaattaggtgcaaatattacataggttaataaatttaaagtagggtatttgt...
Basic information
species | Glycine max |
transcript | GLYMA08G18810.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G18810.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G53650.2 (Arabidopsis thaliana), 5'ss of exon 3
GTTACTGAGGAGCGGCTTGCTGCCTTATTCAGCAGCTGTGGACAAgtaagttatgagccttgattgatagcttgattactctttcttagtttacaattaggtgcaaatattacataggttaataaatttaaagtagggtatttgt
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GTGACTGAGGAAGGCCTTGCTGGCTTGTTCAGCAGCTGTGGACAAgtaagttgaaatctataa------gctttgttaccggttttcatcttttgtttgttaattaatattacattcttct-----tctgaag------------
upper sequence: GLYMA08G18810.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv19s0176g00140.t01 (Vitis vinifera), 5'ss of exon 3
GTTACTGAGGAGCGGCTTGCTGCCTTATTCAGCAGCTGTGGACAAgtaagtta-tgag---ccttgattgatagcttgattactctttcttagtt-tacaattaggtgcaaatattacataggttaataaatttaaagtagggtatttgt
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GTCACTGAGGAGCGGCTTGCTGCCTTATTTAGTAGCTGTGGACAAgtaagttactgtgtctccttcattgtaaatttg--tatgttgtattagctgtttaatcagtggttatggttgcttgggtcaattaatatctggttactttat---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19934604|gb|BQ079634.1|BQ079634EST: GTTACTGAGGAGCGGCTTGCTGCCTTATTCAGCAGCTGTGGACAA GTAATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTCCGTTTTGCT
genomic: GTTACTGAGGAGCGGCTTGCTGCCTTATTCAGCAGCTGTGGACAAgtaagttatg ... tgaattgaagGTAATTGATTGCCGAATTTGTGGTGATCCACATTCAGTTCTCCGTTTTGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTACTGAGGAGCGGCTTGCTGCCTTATTCAGCAGCTGTGGACAAgtaagttatgagccttgattgatagcttgattactctttcttagtttacaattaggtgcaaatattacataggttaataaatttaaagtagggtatttgt
- - - GAGGAG
- - - - - - - - TGCTGC
- - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - CAGCTG