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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGTGAGACAAGCGGCTGCCAAGACAAACGACTTGGCTGGTGATGGAACCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAGgtaggattatttgttgtcttattggaaatttagtgtcataactaataactacttggttttgttttttgtaatgcaactaggcctcattttatgttaattttcgcag

Basic information

species Glycine max
transcript GLYMA08G18760.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 3
lower sequence: LOC_Os02g01280.1 (Oryza sativa), 5'ss of exon 4
GTTGGTGAGACAAGCGGCTGCCAAGACAAACGACTTGGCTGGTGATGGAACCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAGgtaggattatttgttgtcttattggaaatttagtgtcataactaataactacttggttttgttttttgtaatgcaactaggcctcattttatgttaattttcgcag
 || ||  | ||||| || ||||||||||| || |||||||||||||| || ||||| || ||||| |||||||| ||  | ||  | || ||||| ||||||     || |     | |  |   |  ||| | | | | |  |||| || ||   || ||| |  | |   |||    |  ||      |||| | |||| |||
ATTAGTCCGGCAAGCTGCAGCCAAGACAAATGATTTGGCTGGTGATGGGACAACGACTTCTGTTGTCCTTGCTCAAGGGATGATCACAGAGGGTGTTAAGgtacaccaatataaaagccttgt---atcttaattttacagc--ataaatattttacttggttctgggaa---caatcgtggatc------tgtttactttcccag

upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 4
GTTGGTGAGACAAGCGGCTGCCAAGACAAACGACTTGGCTGGTGATGGAACCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAGgtag--gattatttgttgtcttattggaaatttagtgtcataactaataactactt-ggttttgttttttgtaatgcaactaggcctcattttatgttaattttcgcag
 |||||  | ||||| ||||| || ||||| ||||||||||||||||| || || || |||||||| |||||||| ||  | ||  | || ||||| ||||||   | |  | | |   || ||  | | |   || || ||  |  | |||  |  ||   ||| |     |||      |||    |||||  | || |||   |||
ATTGGTCCGCCAAGCTGCTGCTAAAACAAATGACTTGGCTGGTGATGGGACAACCACTTCGGTTGTCCTTGCTCAAGGGATGATTACTGAGGGTGTAAAGgtacacgctagtatataacctcat--gtattggggtatc-tatatcgtcactgttccggccatgtctc----aatatctagagg----atttt--gctactttctccag

upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 3
lower sequence: AT5G56500.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTGGTGAGACAAGCGGCTGCCAAGACAAACGACTTGGCTGGTGATGGAACCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAGgtaggattatttgttgtcttattggaaatttagtgtcataactaataactacttggttttgttttttgtaatgcaactaggcctcattttatgttaattttcgcag
| | ||||||||||| ||| ||||||| || ||||| |||||||||||||| ||||| || |||||||||||||| |||||||| || |||||||| |||||  | | |||| |||||||  |     ||  |  |   ||  ||  | |  ||  | ||||| || || ||   |   ||  | | ||  |||            
GCTAGTGAGACAAGCTGCTTCCAAGACTAATGACTTAGCTGGTGATGGAACAACGACTTCTGTTGTTCTTGCTCAAGGTCTTATTGCTGAAGGTGTAAAGgtttg-taatttattgtctttctt----ttgtgaatttgaaacaaccagtgttttttgttgttgtt-gtgatatgatgtggattgaatt-gtgtag----------

upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 3
lower sequence: AT3G13470.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTGGTGAGACAAGCGGCTGCCAAGACAAACGACTTGGCTGGTGATGGAACCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAGgtagg---attatttgttgtcttattggaaatttagtgtcataactaataactacttggttttgttttttgtaatgcaactaggcctcattttatgttaattttcgcag
| | || || ||||| ||||| ||||| || |||||||||||||| || || || || || ||||||||||| || ||| |||| || || ||||||||||| |    ||| ||  ||    | |     ||||  |      |  || |     ||  | |    ||||||| |      ||                          
GCTTGTAAGGCAAGCAGCTGCAAAGACCAATGACTTGGCTGGTGACGGTACAACAACATCTGTTGTTCTTGCACAAGGTTTTATTGCTGAGGGTGTCAAGgttgttacattcttctttcagctttctctgattttatactcagaagaacagtatattaatctgaaattttgtatttt--tcag--------------------------

upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 3
lower sequence: AT1G55490.2 (Arabidopsis thaliana), 5'ss of exon 4
GTTGGTGAGACAAGCGGCTGCCAAGACAAACGACTTGGCTGGTGATGGAACCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAGgtaggattatttgttgtcttattggaaatttagtgtcataactaataactacttggttttgttttttg-taatgcaactaggcctcattttatgttaattttcgcag
| | ||||| |||||||||||||| || || |||||||||||||| || || || || || ||||||||||| || ||| |||| || || |||||||||||  |  ||    |  ||||   |     |   ||| | |  | | ||    |||   |  ||||  | | ||   | |  |                         
GCTTGTGAGGCAAGCGGCTGCCAAAACCAATGACTTGGCTGGTGACGGTACAACAACATCTGTTGTTCTTGCACAAGGTTTTATCGCTGAGGGTGTCAAGgtctgtgtaacattcttctttcagctttctctatgtgaaacttcaaaaacttttgtactaattttaagattatcttattcag-------------------------

upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv06s0004g00240.t01 (Vitis vinifera), 5'ss of exon 4
GTTGGTGAGACAAGCGGCTGCCAAGACAAACGACTTGGCTGGTGATGGAACCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAGgtaggattat---ttgttgtcttattgg---aaatttagtgtcataactaa-taactacttggttttgttttttgtaatgc-aactaggcctcattttatgttaattttcgcag
 || ||||||||||| ||||||||||| |||||||||||||| ||||| || || || || ||||||||||| || || ||||| || ||||||||||||||  | || |   |   | | || || |   ||  | |    ||||   |  |||  |  || |     | | | |  ||| ||||| |     |  |   || |         
ATTAGTGAGACAAGCAGCTGCCAAGACCAACGACTTGGCTGGGGATGGGACAACAACATCTGTTGTTCTTGCACAAGGGCTTATTGCTGAAGGTGTCAAGgtctgtttttgcttaactcttttgtttggtaaacatgaagaacatagtaatctaaggaaatgataacactgtgtttgttgctaactaagatcattcattcattcag--------

upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 3
lower sequence: PP1S276_75V6.1 (Physcomitrella patens), 5'ss of exon 3
GTTGGTGAGACAAGCGGCTGCCAAGACAAACGACTTGGCTGGTGATGGAACCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAGgtaggattatttgttgtcttattggaaatttagtgtcataactaataactacttggttttgtttt---ttgtaat-gcaactaggcctcattttatgtt-aattttcgcag----------------------------------
|||||| || |||||  |||||||||| ||||| |||||||||||||| ||||| ||||| || ||||||||||| || || || || || |||||||||||||  | ||     | || | ||     ||| |||  ||  |   | ||       ||  |  |   |||| || |||       |  || ||  | | ||| |  | ||                                  
GTTGGTTAGGCAAGCTTCTGCCAAGACCAACGATTTGGCTGGTGATGGTACCACCACCTCTGTGGTTCTTGCTCAAGGGCTCATTGCCGAGGGTGTCAAGgtagcttcatcacccgcctgaatgtcttcttaatgtagtatttgcgatctttcaaagttactcctcagttgttatcgcactcgaatcgaatattcggctcaatctatgaagttgagctaatctggtcaactttcttcacacgtag

upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 3
lower sequence: PP1S14_298V6.1 (Physcomitrella patens), 5'ss of exon 3
GTTGGTGAGACAAGCGGCTGCCAAGACAAACGACTTGGCTGGTGATGGAACCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAGgtaggattatttgttgtcttattggaaatttagtgtcataactaata-actac--ttggttttgttttttgtaatgcaactaggcctc---attttatgttaattttcgcag
||||||||| |||||||| |||||||| || |||||||||||||| || ||||| ||||| || ||||| || || || || || || || || ||||||||||| | | || |    | ||   |   |   | |   |   |  | |||    ||   | ||  | |       |    | ||  |     ||| ||   | ||  | ||
GTTGGTGAGGCAAGCGGCAGCCAAGACGAATGACTTGGCTGGTGACGGTACCACCACCTCTGTCGTTCTCGCACAAGGGCTCATTGCTGAGGGCGTCAAGgtaggttcacttttctcatcatcaaattctctatatttcattcaggagactgtgattcactatggctctctcgtgcctgtgaagctactaaggtttttgcataattctgtag

upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 3
lower sequence: EFJ36935 (Selaginella moellendorffii), 5'ss of exon 3
GTTGGTGAGACAAGCGGCTGCCAAGACAAACGACTTGGCTGGTGATGGAACCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAGgtaggattatttgttgtcttattggaaatttagtgtcataa-ctaataactacttggttttgttttttgtaatgcaactaggcctcattttatgttaattttcgcag
| | || |||||||| ||  | || ||||| ||||||||||||||||||||||| || || || ||| | || || || ||||||   || |||||||||||  | || ||| |    ||  ||||| |||  ||    || ||      || || |                                                  
GCTTGTAAGACAAGCTGCGTCAAAAACAAATGACTTGGCTGGTGATGGAACCACCACGTCCGTGGTTTTGGCACAAGGACTTATAAACGAGGGTGTCAAGgtttg-ttttttctcaagttcatggaagtttcatgaggcaatctggagggtaatttgcag-----------------------------------------------

upper sequence: GLYMA08G18760.2 (Glycine max), 5'ss of exon 3
lower sequence: EFJ33580 (Selaginella moellendorffii), 5'ss of exon 3
GTTGGTGAGACAAGCGGCTGCCAAGACAAACGACTTGGCTGGTGATGGAACCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAGgtaggattatttgttgtcttattggaaatttagtgtcataac-taataactacttggttttgttttttgtaatgcaactaggcctcattttatgttaattttcgcag
| | || |||||||| ||  | || ||||| ||||||||||||||||||||||| || || || ||| | || || || ||||||   || |||||||||||  |||| ||| |    ||  ||||| |||  ||    ||  |    | || || |                                                  
GCTTGTAAGACAAGCTGCGTCGAAAACAAATGACTTGGCTGGTGATGGAACCACCACGTCCGTGGTTTTGGCACAAGGACTTATAAACGAGGGTGTCAAGgtttgatt-tttctcaagttcatggaattttcatgaggcaatgtggagagtaatttgcag-----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120530535|gb|EH258668.1|EH258668
EST:     CCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAG                         GTTGTTGCAGCTGGGGCCAACCCTGTGCTCATCACACGTGGCATTGAGAAG
genomic: CCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAGgtaggattat ... attttcgcagGTTGTTGCAGCTGGGGCCAACCCTGTGCTCATCACACGTGGCATTGAGAAG
EST: gi|207747526|gb|GD717907.1|GD717907
EST:     CCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAG                         GTTGTTGCAGCTGGGGCCAACCCTGTGCTCATCACACGTGGCATTGAGAAG
genomic: CCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAGgtaggattat ... attttcgcagGTTGTTGCAGCTGGGGCCAACCCTGTGCTCATCACACGTGGCATTGAGAAG
EST: gi|193564338|gb|FK519201.1|FK519201
EST:     CCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAG                         GTTGTTGCAGCGTGGGGCCAACCCTGTGCTCAT
genomic: CCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAGgtaggattat ... attttcgcagGTTGTTGCAGC-TGGGGCCAACCCTGTGCTCAT
EST: gi|193653960|gb|FK596948.1|FK596948
EST:     CGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAG                         GTTGTTGCAGCTGGGGCCAACCCTGTGCTCATCACACGTGGCATTGAGAAG
genomic: CGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAGgtaggattat ... attttcgcagGTTGTTGCAGCTGGGGCCAACCCTGTGCTCATCACACGTGGCATTGAGAAG
EST: gi|193528896|gb|FK483628.1|FK483628
EST:     CCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAG                         GTTGTTGCAGCTGGGGCCAACCCTGTGCTCATCACACGTGGC
genomic: CCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAGgtaggattat ... attttcgcagGTTGTTGCAGCTGGGGCCAACCCTGTGCTCATCACACGTGGC
EST: gi|120530550|gb|EH258683.1|EH258683
EST:     CCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAG                         GTTGTTGCAGCTGGGGCCAACCCTGTGCTCATCACACGTGGCATTGAGAAG
genomic: CCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAGgtaggattat ... attttcgcagGTTGTTGCAGCTGGGGCCAACCCTGTGCTCATCACACGTGGCATTGAGAAG
EST: gi|17401201|gb|BM177983.1|BM177983
EST:     CCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAG                         GTTGTTGCAGCTGGGGCCAACCCTGTGCTCATCACACGTGGCATTGAGAAG
genomic: CCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAGgtaggattat ... attttcgcagGTTGTTGCAGCTGGGGCCAACCCTGTGCTCATCACACGTGGCATTGAGAAG
EST: gi|20207910|gb|BQ133999.1|BQ133999
EST:     CCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAG                         GTTGTTGCAGCTGGGGCCAACCCTGTGCTCATCACACGTGGCATTGAGAAG
genomic: CCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAGgtaggattat ... attttcgcagGTTGTTGCAGCTGGGGCCAACCCTGTGCTCATCACACGTGGCATTGAGAAG
EST: gi|15201304|gb|BI424801.1|BI424801
EST:     CCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAG                         GTTGTTGCAGCTGGGGCCAACCCTGTGCTCATCACACGTGGCATTGAGAAG
genomic: CCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAGgtaggattat ... attttcgcagGTTGTTGCAGCTGGGGCCAACCCTGTGCTCATCACACGTGGCATTGAGAAG
EST: gi|193655361|gb|FK596651.1|FK596651
EST:     CCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAG                         GTTGTTGCAGCTGGGGCCAACCCTGTGCTCATCACACGTGGCATTGAGAAG
genomic: CCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAGgtaggattat ... attttcgcagGTTGTTGCAGCTGGGGCCAACCCTGTGCTCATCACACGTGGCATTGAGAAG
EST: gi|192323269|gb|FK015275.1|FK015275
EST:     CCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAG                         GTTGTTGCAACTGGGGCCAACCCTGTGCTCATCACACGTGGCATTGAGAAG
genomic: CCACGACCTCGGTTGTTCTTGCTCAGGGTCTTATAGCGGAAGGTGTCAAGgtaggattat ... attttcgcagGTTGTTGCAGCTGGGGCCAACCCTGTGCTCATCACACGTGGCATTGAGAAG