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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGCAGAAGTTGCCAAAGATGGTGTTTGACTACTACGCATCTGGTGCAGAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTgtaagatttttttcatgcatacttttacagtagttatctacaaaactataatgtctagttatgttccttagatatttcatgtacctgtatttctaagaatagaaacaaatgttgatatgatgaatatatgatcgataaatatacag

Basic information

species Glycine max
transcript GLYMA08G18750.3
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20498726|gb|BQ273656.1|BQ273656
EST:     GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTT                         GTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
genomic: GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTgtaagatttt ... aaatatacagGTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
EST: gi|120533762|gb|EH261895.1|EH261895
EST:     GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTT                         GTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
genomic: GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTgtaagatttt ... aaatatacagGTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
EST: gi|213596244|gb|DB960176.1|DB960176
EST:     GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTT                         GTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
genomic: GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTgtaagatttt ... aaatatacagGTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
EST: gi|209719071|gb|BW659374.1|BW659374
EST:     GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTT                         GTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
genomic: GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTgtaagatttt ... aaatatacagGTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
EST: gi|16995820|gb|BM085192.1|BM085192
EST:     GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTT                         GTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
genomic: GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTgtaagatttt ... aaatatacagGTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
EST: gi|209703121|gb|BW664657.1|BW664657
EST:     GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTT                         GTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
genomic: GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTgtaagatttt ... aaatatacagGTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
EST: gi|15199663|gb|BI423946.1|BI423946
EST:     GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTT                         GTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
genomic: GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTgtaagatttt ... aaatatacagGTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
EST: gi|20207665|gb|BQ133754.1|BQ133754
EST:     GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTT                         GTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
genomic: GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTgtaagatttt ... aaatatacagGTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
EST: gi|15286497|gb|BI470388.1|BI470388
EST:     GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTT                         GTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
genomic: GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTgtaagatttt ... aaatatacagGTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
EST: gi|120534301|gb|EH262434.1|EH262434
EST:     GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTT                         GTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
genomic: GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTgtaagatttt ... aaatatacagGTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
EST: gi|12688969|gb|BG155305.1|BG155305
EST:     GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTT                         GTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
genomic: GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTgtaagatttt ... aaatatacagGTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
EST: gi|23052894|gb|BU577385.1|BU577385
EST:     GAGGACCAGTGGACTCTGCAGGATAACAGAAATGCCTTTTCCAGAATTTT                         GTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
genomic: GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTgtaagatttt ... aaatatacagGTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
EST: gi|120534568|gb|EH262701.1|EH262701
EST:     GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTT                         GTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
genomic: GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTgtaagatttt ... aaatatacagGTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
EST: gi|20448798|gb|BQ252922.1|BQ252922
EST:     GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTT                         GTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
genomic: GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTgtaagatttt ... aaatatacagGTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
EST: gi|120534652|gb|EH262785.1|EH262785
EST:     GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTT                         GTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
genomic: GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTgtaagatttt ... aaatatacagGTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
EST: gi|120529200|gb|EH257334.1|EH257334
EST:     GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTT                         GTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
genomic: GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTgtaagatttt ... aaatatacagGTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
EST: gi|10847326|gb|BF070031.1|BF070031
EST:     GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTT                         GTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
genomic: GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTgtaagatttt ... aaatatacagGTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
EST: gi|5607072|gb|AI901170.1|AI901170
EST:     GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTT                         GTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
genomic: GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTgtaagatttt ... aaatatacagGTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
EST: gi|10233637|gb|BE802525.1|BE802525
EST:     GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTT                         GTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
genomic: GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTgtaagatttt ... aaatatacagGTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
EST: gi|209725760|gb|BW659891.1|BW659891
EST:     GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTT                         GTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC
genomic: GAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTgtaagatttt ... aaatatacagGTTTCGGCCACGTATTCTTATTGATGTGAGCAAGATAGACATCACAACTAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAAGCAGAAGTTGCCAAAGATGGTGTTTGACTACTACGCATCTGGTGCAGAGGACCAGTGGACTCTGCAGGAGAACAGAAATGCCTTTTCCAGAATTTTgtaagatttttttcatgcatacttttacagtagttatctacaaaactataatgtctagttatgttccttagatatttcatgtacctgtatttctaagaatagaaacaaatgttgatatgatgaatatatgatcgataaatatacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA