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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAGTCTGTAAAGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgtgcatgtgcatgtttctctgtgtgaatttgtttgtcacttacattacgaaatcaagatgctcagtacccatgagtatccatgacaagtgctcatttgatttttcatttgaaattcaacattatgctag

Basic information

species Glycine max
transcript GLYMA08G18560.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6069887|gb|AW099483.1|AW099483
EST:     GGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAG                         GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
genomic: GGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgt ... attatgctagGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
EST: gi|6069892|gb|AW099486.1|AW099486
EST:     GGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAG                         GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
genomic: GGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgt ... attatgctagGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
EST: gi|6914456|gb|AW395986.1|AW395986
EST:     AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAG                         GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
genomic: AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgt ... attatgctagGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
EST: gi|27426337|gb|CA937857.1|CA937857
EST:     AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAG                         GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
genomic: AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgt ... attatgctagGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
EST: gi|6072271|gb|AW101658.1|AW101658
EST:     AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAG                         GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
genomic: AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgt ... attatgctagGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
EST: gi|4313320|gb|AI460439.1|AI460439
EST:     AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAG                         GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
genomic: AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgt ... attatgctagGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
EST: gi|58014741|gb|CX701483.1|CX701483
EST:     AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATTTAAG                         GACCATGAACGTGCTTACTTGGATTCTGCGGATTGGGCACTTGGAAAG
genomic: AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgt ... attatgctagGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
EST: gi|8827757|gb|BE211487.1|BE211487
EST:     AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAG                         GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
genomic: AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgt ... attatgctagGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
EST: gi|254324562|gb|GR833987.1|GR833987
EST:     AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAG                         GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
genomic: AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgt ... attatgctagGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
EST: gi|192313317|gb|FK005089.1|FK005089
EST:     AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAG                         GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
genomic: AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgt ... attatgctagGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
EST: gi|6914757|gb|AW396287.1|AW396287
EST:     AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAG                         GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
genomic: AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgt ... attatgctagGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
EST: gi|15202918|gb|BI425686.1|BI425686
EST:     AGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAG                         GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
genomic: AGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgt ... attatgctagGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
EST: gi|4303380|gb|AI443468.1|AI443468
EST:     AGAAAAAGTATGGAGGAATGCTGCCCAAATAGCCACCACTCATATCTAAG                         GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
genomic: AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgt ... attatgctagGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
EST: gi|31472363|gb|CD414391.1|CD414391
EST:     AGAGAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAG                         GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
genomic: AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgt ... attatgctagGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
EST: gi|11412304|gb|BF424315.1|BF424315
EST:     AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAG                         GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
genomic: AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgt ... attatgctagGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
EST: gi|7639980|gb|AW734290.1|AW734290
EST:     AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAG                         GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
genomic: AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgt ... attatgctagGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
EST: gi|10233243|gb|BE802131.1|BE802131
EST:     AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAG                         GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
genomic: AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgt ... attatgctagGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
EST: gi|254324561|gb|GR833986.1|GR833986
EST:     AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAG                         GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
genomic: AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgt ... attatgctagGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
EST: gi|31309242|gb|CD394445.1|CD394445
EST:     AGAGAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAG                         GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
genomic: AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgt ... attatgctagGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
EST: gi|19348889|gb|BM893421.1|BM893421
EST:     AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAG                         GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
genomic: AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgt ... attatgctagGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
EST: gi|4298166|gb|AI442722.1|AI442722
EST:     AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAG                         GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
genomic: AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgt ... attatgctagGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
EST: gi|192313316|gb|FK005088.1|FK005088
EST:     AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAG                         GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
genomic: AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgt ... attatgctagGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
EST: gi|31305685|gb|CD390888.1|CD390888
EST:     AGAGAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAG                         GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
genomic: AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgt ... attatgctagGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
EST: gi|10233289|gb|BE802177.1|BE802177
EST:     AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAG                         GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
genomic: AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgt ... attatgctagGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
EST: gi|6914693|gb|AW396223.1|AW396223
EST:     AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAG                         GACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG
genomic: AGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgt ... attatgctagGACCATGAACGTGCTTACTTCGATTCTGCGGATTGGGCACTTGGAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGAGTCTGTAAAGAAAAAGTATGGAGGAATGCTGCCCAAAAAGCCACCACTCATATCTAAGgtgtgtgtgtgcatgtgcatgtttctctgtgtgaatttgtttgtcacttacattacgaaatcaagatgctcagtacccatgagtatccatgacaagtgctcatttgatttttcatttgaaattcaacattatgctag

- - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - -  TGCTGC