Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGAGATATAAAGGTCTTGTTTGTGAAGCCACTTGTTTACTGGACTCGATTTTTTATCATAGCTACAGCATTTTCTCGTCCCCAAATTGATGCTATCGGgtatggcctgtgtcattgatctttttatttttagcaggtaatgtttgaggatgtctttttgccgtgctgaaagcaggatatattcatgtgttgatattttcattttag

Basic information

species Glycine max
transcript GLYMA08G18330.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G18330.1 (Glycine max), 5'ss of exon 3
lower sequence: AT3G12930.1 (Arabidopsis thaliana), 5'ss of exon 3
CAGGAGATATAAAGGTCTTGTTTGTGAAGCCACTTGTTTACTGGACTCGATTTTTTATCATAGCTACAGCATTTTCTCGTCCCCAAATTGATGCTATCGGgtatggcctgtgtcattgatctttttat-ttttagcaggtaatgtttgaggatgtctttttgccgtgctgaaagcaggatatattcatgtgttgatattttcattttag
| |||||||| |||||| | ||||| ||||| ||||||||||||||||| ||||| ||||| || || || ||||| || || ||||||||||| || |||||  |  |   | |    |  |  ||| ||  |    | ||    | |   |  |||| |  | |  ||||    | ||  |                          
CTGGAGATATTAAGGTCCTCTTTGTCAAGCCTCTTGTTTACTGGACTCGGTTTTTCATCATTGCCACTGCGTTTTCCCGCCCTCAAATTGATGCAATAGGgtacagatttatttagacttgctcatatattccactttggaaaacatcaaatttactttct--cttcatgaactgcgaatgcag-------------------------

upper sequence: GLYMA08G18330.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv19s0027g00700.t01 (Vitis vinifera), 5'ss of exon 4
CAGGAGATATAAAGGTCTTGTTTGTGAAGCCACTTGTTTACTGGACTCGATTTTTTATCATAGCTACAGCATTTTCTCGTCCCCAAATTGATGCTATCGGgtatggcctg-----tgtcat-tgatctttttatttttagcaggtaatgtttgaggatgtctttttgccgtg-ctgaaagcaggatatattcatgtgttgatattttcattttag------------------------
| |  ||||||| |||| | |||||||||||  | || || |||||||| ||||||||||| || |||||||||||||| |||||||||||||| || |||||||| ||      |||  | |||| ||| | | ||| ||| |  || ||| |   | | | |||    |   ||     |   | ||| |  |||   ||      ||  | |                        
CTGCCGATATAAGGGTCCTCTTTGTGAAGCCTTTAGTGTATTGGACTCGTTTTTTTATCATTGCCACAGCATTTTCTCGCCCCCAAATTGATGCCATTGGgtatggtcttaactctgttttatgatttttgtttgtttggcaagctatcttt-attttatttgtttattttaattggttttattttctatgcgggtggatatgcagcaatgcttgaaataaccttttattgtattgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10845462|gb|BF068581.1|BF068581
EST:     TTTTTTATCATAGCTACAGCATTTTCTCGTCCCCAGATTGATGCTATCGG                         GTCCAGAATTAGAGATCGAGCTGAGAAGAAATATGGAAAAATTCCAACCGG
genomic: TTTTTTATCATAGCTACAGCATTTTCTCGTCCCCAAATTGATGCTATCGGgtatggcctg ... ttcattttagGTCCAGAATTAGAGATCGAGCTGAGAAGAAATATGGAAAAATTCCAACCGG
EST: gi|16997092|gb|BM086464.1|BM086464
EST:     TTTTTTATCATAGCTACAGCATTTTCTCGTCCCCAAATTGATGCTATCGG                         GTCCAGAATTAGAGATCGAGCTGAGAAGAAATATGGAAAAATTCCAACCGG
genomic: TTTTTTATCATAGCTACAGCATTTTCTCGTCCCCAAATTGATGCTATCGGgtatggcctg ... ttcattttagGTCCAGAATTAGAGATCGAGCTGAGAAGAAATATGGAAAAATTCCAACCGG