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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTTTGGTGCACCTGAGCCAGTTCCAAAAGAGCAGCTGTACACAGAGATTGTAGATGACTTGCGTGGGGGTGATCCATGCATTGGTTCAGGATCTCAGgtgtttctgtgctttcttagttaatgtttcgtatggaaggaccaatccggtttacaaaagattatctttgattcaatgactattttgtacatgcgatgat...

Basic information

species Glycine max
transcript GLYMA08G18300.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G18300.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv19s0027g00520.t01 (Vitis vinifera), 5'ss of exon 2
ATATTTTGGTGCACCTGAGCCAGTTCCAAAAGAGCAGCTGTACACAGAGATTGTAGATGACTTGCGTGGGGGTGATCCATGCATTGGTTCAGGATCTCAGgtgtttctgtgctttcttagttaatgtttcgtatggaaggaccaatccggtttacaaaagattatctttgattcaatgactattttgtacatgcgatgat
 ||||||||||||||||||  || ||| ||||| |||   || || |||||| | |||||| ||||||||||||||||||| || |||||||| |||||||| ||     |   ||||      | | |  | |      ||   |||         | | |  |  ||   ||  ||  |      || |    ||   
TTATTTTGGTGCACCTGAGTTAGCTCCCAAAGAACAGTATTATACTGAGATTATGGATGACCTGCGTGGGGGTGATCCATGTATCGGTTCAGGTTCTCAGgtattctcagggcctcttgcagcctttctgttttaattaaactggtccatcgatgggagggtggtagttttatctctgcatgaaaattataccttattcc