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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgattggttgattatctctgcctctggactggatctgtttataacccacctcactttcagcttttcaatttgaaatagattattttggagaacct...

Basic information

species Glycine max
transcript GLYMA08G17810.5
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G17810.5 (Glycine max), 5'ss of exon 3
lower sequence: Vv01s0011g01960.t01 (Vitis vinifera), 5'ss of exon 2
CCCTTCTGGAAAGCTTGTTCAGATTGAGCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgattggttgattatctctgcctctggactggatctgtttataacccacctcactttcagcttttcaatt-tgaaatagattattttggagaacct
 ||||| ||||||||||||||||| |||||||| ||||| || || || || || ||||| ||| | || || ||||||   |      ||  |  |   | | |    |||  || |    | ||   |  | |  ||    || |   || || ||| |  |  ||          
TCCTTCGGGAAAGCTTGTTCAGATCGAGCATGCATTGACCGCCGTTGGCTCAGGCCAAACATCTCTAGGGATCAAAGgtatattcgccatttttattggtttcttggaaacttcatttaaaaaaaaaaaaaataaaattggaattcttttttatgtaatggtcttattcattttgtt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15000807|gb|BI321621.1|BI321621
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGCTACCGAGAAGTATTTTGCCATCTATATTG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAG-AAATTGCCATCTATATTG
EST: gi|27424967|gb|CA936487.1|CA936487
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
EST: gi|4305924|gb|AI443831.1|AI443831
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
EST: gi|13563115|gb|BG551335.1|BG551335
EST:     GCATGCTTTGACGGCTGTCGGTTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTGGTCATTGCTACCGAGACGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
EST: gi|19268728|gb|BM884984.1|BM884984
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
EST: gi|298195959|gb|HO044350.1|HO044350
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
EST: gi|24135847|gb|BU926357.1|BU926357
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
EST: gi|151393662|gb|EV263537.1|EV263537
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
EST: gi|27425474|gb|CA936994.1|CA936994
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
EST: gi|120534400|gb|EH262533.1|EH262533
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
EST: gi|37996790|gb|CF808379.1|CF808379
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGTTTCCGACAAGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
EST: gi|9259235|gb|BE347443.1|BE347443
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
EST: gi|120533401|gb|EH261534.1|EH261534
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
EST: gi|12688055|gb|BG154391.1|BG154391
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
EST: gi|8283306|gb|BE020867.1|BE020867
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
EST: gi|151411669|gb|EV281480.1|EV281480
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
EST: gi|15285795|gb|BI469686.1|BI469686
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
EST: gi|209701353|gb|BW655949.1|BW655949
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
EST: gi|208056326|gb|GD853305.1|GD853305
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
EST: gi|7690855|gb|AW758992.1|AW758992
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
EST: gi|12687912|gb|BG154308.1|BG154308
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
EST: gi|26058444|gb|CA801358.1|CA801358
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
EST: gi|27446035|gb|CA953158.1|CA953158
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
EST: gi|15815476|gb|BI787751.1|BI787751
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
EST: gi|17023069|gb|BM094103.1|BM094103
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
EST: gi|26058340|gb|CA801254.1|CA801254
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
EST: gi|6567102|gb|AW234729.1|AW234729
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
EST: gi|298192268|gb|HO036350.1|HO036350
EST:     GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAG                         CTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG
genomic: GCATGCTTTGACGGCTGTCGGGTCTGGACAAACGTCTTTGGGAATTAAAGgtgattgatt ... attcatgcagCTGCAAATGGAGTTGTCATTGCTACCGAGAAGAAATTGCCATCTATATTGG