Sequence
atgc intronic sequence ATGC exonic sequenceGAAAACCCTAGTTTTCTACACTGGTCGTGCTCCTCATGGCCAAAAGACTGATTGGATCATGCATGAGTATCGCCTTGATGAAGATGATGCTGATATTCAAgtgagaaaactatacatacacatacacttaaactatatatgttcattctcttgatctttagattaagggcacattttgatgaatgaaaaaaacttactta...
Basic information
species | Glycine max |
transcript | GLYMA08G17140.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G17140.1 (Glycine max), 5'ss of exon 3
lower sequence: GRMZM2G104074_T01 (Zea mays), 5'ss of exon 3
GAAAACCCTAGTTTTCTACACTGGTCGTGCTCCTCATGGCCAAAAGACTGATTGGATCATGCATGAGTATCGCCTTGATGAAGATGATGCTGATATTCAAgtgagaaaactata---catacac-atacacttaaactatatatgttcattctcttgatctttagattaagggcacattttgatgaatgaaaaaaacttactta
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AAAGACCCTGGTGTTCTATATCGGCAGGGCGCCGCACGGGAAGAAGACTGAGTGGATCATGCACGAGTACCGCCTTGATGAAGAGAACGTTGAAATTCAGgtaacaag-ctagaggccttgtgttgtacacttc--tttaatttgtttctactagcagctggcaagttgtaaagcaactctgatgatctaatctgcag------
upper sequence: GLYMA08G17140.1 (Glycine max), 5'ss of exon 3
lower sequence: AT1G79580.1 (Arabidopsis thaliana), 5'ss of exon 3
GAAAACCCTAGTTTTCTACACTGGTCGTGCTCCTCATGGCCAAAAGACTGATTGGATCATGCATGAGTATCGCCTTGATGAAGATGATGCTGATATTCAAgtgagaaaactatacatacacatacacttaaactatatatgttcattctcttgatctttagattaagggcacattt-tgatgaatgaaaaaaacttactta
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TAAGACTCTTGTCTTCTACACTGGTCGTGCTCCTCATGGCCAAAAAACCGAATGGATCATGCACGAATATCGCTTGGACGATAGCGAAAACGAAATTCAGgt------acaacatat-----cacaattaatgtttaactctcgaaatctctaatcataatgcttaaagtggatttatcattaatgtgtaatttgcag---
upper sequence: GLYMA08G17140.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv19s0085g01210.t01 (Vitis vinifera), 5'ss of exon 2
GAAAACCCTAGTTTTCTACACTGGTCGTGCTCCTCATGGCCAAAAGACTGATTGGATCATGCATGAGTATCGCCTTGATGAAGATGATGCTGATATTCAAgtgagaaaactatacatacacatacacttaaactatatatgttcattct-cttgatcttta---gattaagggcacattttgatgaatgaaaaaaacttactta
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AAAAACCCTAGTCTTCTACACTGGGCGTGCTCCTCACGGCCAAAAGACTGACTGGATTATGCATGAGTATCGCCTGGATGATGACAATGCCGATGTTCAGgtgaacaattta---attttca-gcagtgaggattaatttagttattttacttgagttctatgaaattaaaaaaaaattaaaaaaaaaaaaacaaaaaaaaaacMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254317458|gb|GR826442.1|GR826442EST: ATTGGATCATGCATGAGTATCGCCTTGATGAAGATGATGCTGATATTCAA GAAGATGGGTGGGTGGTATGCAGGGTGTTCAAAAAGAAAAGCCAAAACCGA
genomic: ATTGGATCATGCATGAGTATCGCCTTGATGAAGATGATGCTGATATTCAAgtgagaaaac ... tttcttgtagGAAGATGGGTGGGTGGTATGCAGGGTGTTCAAAAAGAAAAGCCAAAACCGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAAACCCTAGTTTTCTACACTGGTCGTGCTCCTCATGGCCAAAAGACTGATTGGATCATGCATGAGTATCGCCTTGATGAAGATGATGCTGATATTCAAgtgagaaaactatacatacacatacacttaaactatatatgttcattctcttgatctttagattaagggcacattttgatgaatgaaaaaaacttactta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaaa