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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAAATGGACAAATGTGTGCAATAAAAGAAGTCAAGGTTGTCTTTGATGATCACACATCGAAAGAGTGCCTCAAACAACTTAACCAGgtaattctgatatttcctaagaaaatttatacatgatgctctaacacattatattgtacttttgcagctcttctttgcgctgttgcattggagtttgctttgatatgtccaattataattttttatagtccacaaagttataacattctctatttgattacag

Basic information

species Glycine max
transcript GLYMA08G16670.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G16670.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv04s0044g01290.t01 (Vitis vinifera), 5'ss of exon 3
TGAAAATGGACAAATGTGTGCAATAAAAGAAGTCAAGGTTGTCTTTGATGATCACACATCGAAAGAGTGCCTCAAACAACTTAACCAGgtaattctgatatttcctaagaaaatt---tatacatgatgctc-taacacattatattgtacttttgcagctcttctttgcgctgttgcattggagtttgctttgatatgtccaatt----ataattttttatagtccacaaagttataaca--ttctctatttgattacag
|||||| || ||||||||||| |||||||||||||||||||| |  |||||||| ||||| ||||| ||||| || ||||| ||||||||| ||||   ||||  |   | ||||    ||  || |||||   | | ||| |||||  | || |  || | ||| ||   |  ||  || ||| |||  | |   |  | |||||    |||||  |||  |        |  | | |||  || ||  ||||   ||||
TGAAAACGGGCAAATGTGTGCGATAAAAGAAGTCAAGGTTGTTTCAGATGATCATACATCAAAAGAATGCCTTAAGCAACTGAACCAGgtagttctttcatttttttttagaattaatcatggataatgcttacatctcatcatatttaatttct--agttgttcgttatacaattcgatgggaattttgtgtacaagtttcaatttcatataatcatttgcaagtggtggatctgtgacacattttccttttgtcaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254317547|gb|GR826531.1|GR826531
EST:     TTGTCTTTGATGATCACACATCGAAAGAGTGCCTCAAACAACTTAACCAG                         GAGATAAATTTGCTAAATCAGCTTTCACACCCAAATATTGTTCAATACTAT
genomic: TTGTCTTTGATGATCACACATCGAAAGAGTGCCTCAAACAACTTAACCAGgtaattctga ... ttgattacagGAGATAAATTTGCTAAATCAGCTTTCACACCCAAATATTGTTCAATACTAT
EST: gi|26048798|gb|CA785251.1|CA785251
EST:     TTGTCTTTGATGATCACACATCGAAAGAGTGCCTCAAACAACTTAACCAG                         GAGATAAATTTGCTAAATCAGCTTTCACACCCAAATATTGTTCAATACTAT
genomic: TTGTCTTTGATGATCACACATCGAAAGAGTGCCTCAAACAACTTAACCAGgtaattctga ... ttgattacagGAGATAAATTTGCTAAATCAGCTTTCACACCCAAATATTGTTCAATACTAT